| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,134,025 – 17,134,145 |
| Length | 120 |
| Max. P | 0.704525 |
| Location | 17,134,025 – 17,134,145 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -39.25 |
| Consensus MFE | -24.26 |
| Energy contribution | -25.43 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17134025 120 - 20766785 AGGAAGCGCAUGAUUAACAUUUGGCUGGUAUCUGCUGUGGCCGGGUGCAAAGGAAUGUACAUCCGUUUGUAAUAGCGAGAUACGGAAAAGGCAUCUCUGCUGUUCUCGAACAGAAUGGAC .(((.(..(((..((..((((((((((((....)))..)))))))))..))...)))..).)))(((((.(((((((((((.(......)..))))).))))))..)))))......... ( -36.00) >DroVir_CAF1 4305 120 - 1 AGGAAGCGCAAAAUCAGCAUCUGGCUGGUGUCCGCUGUUGGCGGAUGCAGUGGUAUAUACAUGCGCUUGUAAUAUCUCGAUAGUGGAAACGCAUCGCGGCUAUUCUCAAACAAAAUAGAC .(.(((((((....((((.....))))((((((((.....)))))))).............))))))).)....((.((((.(((....))))))).))(((((.........))))).. ( -39.20) >DroGri_CAF1 7368 120 - 1 AGGAAGCGCAUGAUGAGCAUCUGGCUGGUGUCCGCAGUCGGCGGAUGCAGUGGAAUAUACAUGCGUUUAUAAUAACGUGACAGUGGAAACGCAUCGCGACUGUUCUCGAAGAGAAUGGAC ...(((((((((...(((.....))).((((((((.....))))))))...........))))))))).......(((((..(((....))).))))).((((((((...)))))))).. ( -45.20) >DroWil_CAF1 17785 120 - 1 AGAUAGCGCAUGAUUAACUUCUGGCUGGUAUCGGCUGUGGGUGGAUGCAGUGGGAUAUACAUGCGCCGAUAAUAAUGCGAAGUGGCAAAGGCAUCCCGGCUAUUCUCAAAUAGUAUGGAC .....(((((((.......(((.((((.((((.((.....)).)))))))).)))....))))))).........(((......)))......(((..((((((....))))))..))). ( -34.70) >DroMoj_CAF1 21939 120 - 1 AGGAAGCGCAUGAUGAGCAUUUGGCUGGUGUCCGCUGUGGGCGGAUGCAGUGGUAUAUACAUGCGCUUGUAAUAGCGCGACAUGGAGAACGCAUCGCGACUAUUCUCAAACAAAAUGGAC .(.((((((((((((.((.....((((.(((((((.....))))))))))).)).))).))))))))).)((((((((((..((.....))..))))).)))))................ ( -41.80) >DroAna_CAF1 7967 120 - 1 AAAAAGCGCAUUAUCAGCAUCUGGCUGGUGUCAGCCGUGGGCGGAUGCAGAGGAAUGUACAUUCGUUUGUAGUAACGCGACACCGAAAAGGCGUCCCGACUGUUCUCAAACAGAAUGGAC .......(((((.((.(((((((.(((((....)))..)).))))))).))..))))).((((((((((((((..((.(((.((.....)).))).))))))....))))).)))))... ( -38.60) >consensus AGGAAGCGCAUGAUCAGCAUCUGGCUGGUGUCCGCUGUGGGCGGAUGCAGUGGAAUAUACAUGCGCUUGUAAUAACGCGACACGGAAAACGCAUCGCGACUAUUCUCAAACAGAAUGGAC ...(((((((((..((((.....))))((((((((.....))))))))...........))))))))).......(((((..(......)...))))).(((((((.....))))))).. (-24.26 = -25.43 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:53 2006