Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,811,798 – 2,811,904 |
Length | 106 |
Max. P | 0.922613 |
Location | 2,811,798 – 2,811,904 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 74.69 |
Mean single sequence MFE | -26.00 |
Consensus MFE | -20.21 |
Energy contribution | -20.93 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -1.23 |
Structure conservation index | 0.78 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2811798 106 - 20766785 AUGUAGCAACAAUAUUUCAACUUUUAAAUGUUUAGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAAAUC .((((((((....((((.(((........))).)))).......((......))..))))))))....((((((((..((........))..))))))))...... ( -30.10) >DroSec_CAF1 1126 84 - 1 AGGC----------------------AAUGCUUUGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC .(((----------------------(..((..................))))))....((((......(((((((..((........))..)))))))))))... ( -27.67) >DroSim_CAF1 670 84 - 1 AGGU----------------------AAUGCUUAGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC .(((----------------------(..((.(((..........))).))))))....((((......(((((((..((........))..)))))))))))... ( -27.90) >DroEre_CAF1 1089 97 - 1 ---------CUAUAUAUGUACAUCGAUAUGAUUAAGAUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGGUC ---------.....(((((......)))))...........((((((.(((.((....)).)))......((((((..((........))..))))))))).))). ( -26.80) >DroWil_CAF1 1152 84 - 1 AGUU----------------------AUUGACAAGCUACUUACUGCUAUGCUGCCAUUACUACGACUUUUGGGGCGUGGCACUUGAAAAUUUCUACCCAACAGAUC ((..----------------------(((..((((........(((((((((.(((.............))))))))))))))))..)))..))............ ( -17.12) >DroYak_CAF1 1155 92 - 1 ---------UAAUAUAUAUA-----AUAUGUUUCGUAUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC ---------.(((((((...-----)))))))...........(((...((.......)).))).((.((((((((..((........))..)))))))).))... ( -26.40) >consensus AGGU______________________AAUGAUUAGAUUCCUACCGCUAUGCUGCCAUUGCUGCGACUCUUGGGACGUGGCACUUGGAAGUUGCGUCCCAGCAGAUC ...........................................(((...((.......)).))).((.((((((((..((........))..)))))))).))... (-20.21 = -20.93 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:57 2006