Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,130,646 – 17,130,766 |
Length | 120 |
Max. P | 0.541749 |
Location | 17,130,646 – 17,130,766 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -38.40 |
Consensus MFE | -32.16 |
Energy contribution | -31.28 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.18 |
Mean z-score | -1.27 |
Structure conservation index | 0.84 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17130646 120 + 20766785 CGUUCGUCUUUGAUUGGCCAAGCUUAGGUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCGGAUGCGGGCUGUUGAAGAUGAAGGUGAUGGUGGAUAACACUUGUCGAUGGCUG (.((((((((..((.((((..((.....((.((((((((((((....)))))......)))))))))...)).))))))..)))))))).)((((((((.....))).)))))....... ( -41.40) >DroSec_CAF1 66537 117 + 1 CGUUCGUCUCUGGUUGGCCAAGCUUAGGUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCAGAUGCGGGCUGUUGAAGAU---GGUGAUGGUGAAUAACACUUGUCGAUGGAUU .((((((.((((....(((.......)))..((((((((((((....)))))......))))))))))).)))))).(((((....---((((.((.....)).))))..)))))..... ( -36.60) >DroSim_CAF1 57382 117 + 1 CGUUCGUCUCUGGUUGGCCAAGCUUAGAUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCAGAUGCGGGCUGUUGAAGAU---GGUGAUGGUGAAUAACACUUGUCGAUGGAUU .((((((((((...(((((..((.....((.((((((((((((....)))))......)))))))))...)).)))))....))).---...(((((((.....))).))))))))))). ( -36.70) >DroEre_CAF1 72059 117 + 1 CGUUCGCCUCUGAUUUGCCAAGCUUAGGUGACUAUCCAAUCGGGAGAGCGAUGUUGAGUGGAUGGUGGAAGCGGGCUGUUGAAGAU---GGUGAUGGUGGAUGACACUUGUCGAUGGCUU ...((((((((.....(((..((((...(.((((((((.((((.(......).)))).)))))))).))))).)))......))).---))))).(((.(.((((....)))).).))). ( -36.50) >DroYak_CAF1 73956 117 + 1 CGUUCGCCUCUGAUUGGCCAAGCUAAGGUGACUAUCCAAUCGCGAAAGCGAUGUUGAGUGGAUGGCGGAAGCGGGCUGUUGAAGAU---GGUGAUGGUGGAUGACACUUGUCGAUGGCUU ...((((((((...(((((......((....))((((((((((....)))))......))))).((....)).)))))....))).---))))).(((.(.((((....)))).).))). ( -40.80) >consensus CGUUCGUCUCUGAUUGGCCAAGCUUAGGUGACUAUCCAGUCGCGAGAGCGAUGUUGAGUGGAUAGCGGAUGCGGGCUGUUGAAGAU___GGUGAUGGUGGAUAACACUUGUCGAUGGCUU .((((((.((((....(((.......)))..((((((((((((....)))))......))))))))))).))))))...............((((((((.....))).)))))....... (-32.16 = -31.28 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:47 2006