Locus 5260

Sequence ID 2R_DroMel_CAF1
Location 17,125,663 – 17,125,783
Length 120
Max. P 0.589510
window8400

overview

Window 0

Location 17,125,663 – 17,125,783
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.17
Mean single sequence MFE -42.54
Consensus MFE -33.94
Energy contribution -33.86
Covariance contribution -0.08
Combinations/Pair 1.18
Mean z-score -1.45
Structure conservation index 0.80
SVM decision value 0.11
SVM RNA-class probability 0.589510
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17125663 120 - 20766785
AACGCUCUUCGGCGAGAGUGCGGGCGGUUCUUCAGUACAUCUGCACACUUUUGCCCGGCAUGCCAAGCGACUAUUCCACAAGGCUAUCAUGCAGAGUGGAACAGCGAACAUGGAAUGGGU
...(((((((((((((((((...((((.............)))).))))))))))...((((.....((.((.((((((...((......))...)))))).))))..))))))).)))) ( -40.02)
>DroSec_CAF1 61462 120 - 1
AACCCUCUUCGGUGAGAGUGCGGGUGGUUCUUCCGUACAUCUGCACACUUUUGCCCGGCAUGCCAACCGACUAUUCCACAAGGCUAUCAUGCAGAGUGGAACAGCCAACCUGGAGUGGGU
.((((.((((((..((((((((((((...........)))))))..)))))..)).((....))....(.((.((((((...((......))...)))))).)).).....)))).)))) ( -43.50)
>DroSim_CAF1 52339 120 - 1
AACCCUCUUCGGUGAGAGUGCGGGUGGUUCUUCAGUACAUCUGCACACUUUUGCCCGGCAUGCCAACCGACUAUUCCACAAGGCUAUCAUGCAGAGUGGAACAGCAAACAUGGAGUGGGU
.((((.((((((..((((((((((((...........)))))))..)))))..)).((....))....(.((.((((((...((......))...)))))).)))......)))).)))) ( -43.50)
>DroEre_CAF1 66938 120 - 1
AACCCUCUUUGGCGAGAGUGCGGGCGGUUCUUCAGUGCAUCUGCACACACUUGCCCGUCAUGCCAACCGACUAUUCCACAAGGCUAUCAUGCAGAGUGGGACUGCCAACAUGGAGUGGGU
..(((((((((((.((.((((((((((....)).((((....))))......))))).)))............((((((...((......))...)))))))))))))...)))).)).. ( -41.80)
>DroYak_CAF1 68840 120 - 1
AACCCUCUUUGGCGAGAGUGCGGGCGGUGCUUCAGUGCAUCUGCAUACCCUGGCCCAUCAUGCCAACCGACUAUUCCACAAGGCUAUCAUGCAGAGUGGAACAGCCAACAUGGAGUGGGU
..(((((((((((...(((.((((((((((......))).))))......((((.......)))).)))))).((((((...((......))...))))))..)))))...)))).)).. ( -43.90)
>consensus
AACCCUCUUCGGCGAGAGUGCGGGCGGUUCUUCAGUACAUCUGCACACUUUUGCCCGGCAUGCCAACCGACUAUUCCACAAGGCUAUCAUGCAGAGUGGAACAGCCAACAUGGAGUGGGU
.((((.((((((((((((((...((((.............)))).)))))))))).............(.((.((((((...((......))...)))))).)))......)))).)))) (-33.94 = -33.86 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:24 2006