Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,810,341 – 2,810,437 |
Length | 96 |
Max. P | 0.524626 |
Location | 2,810,341 – 2,810,437 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 67.07 |
Mean single sequence MFE | -19.67 |
Consensus MFE | -9.23 |
Energy contribution | -10.90 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.14 |
Mean z-score | -1.85 |
Structure conservation index | 0.47 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2810341 96 - 20766785 UUACAUUUAAGUUAUGUU----UUAAAUCAGUGAGUAUUAAG------------UCGCUUUAAUUGAUUAAUU--CAGUCUUCAGCUGUA-UAUUCAGCUAACUGAAAUACAUGU ............(((((.----...(((((((((((......------------..))))..)))))))..((--((((....(((((..-....))))).))))))..))))). ( -19.10) >DroSec_CAF1 16971 100 - 1 ----AUUUAAGUAAUGUU----UUAAAUCUGUCACAAUUAAGUUAAGCAAUCGAUCGCUUUUAUUGAUUAAUU--CAGUCUUCAGCUGUA-GAUUCAGCUUACUUAAAUA----U ----((((((((((....----......(((....((((((...((((........))))...))))))....--)))......((((..-....)))))))))))))).----. ( -21.00) >DroYak_CAF1 16715 109 - 1 UUACAUUUGAGUUAUGUCAAUAUUCAAUCGGCCACACUUAAAUAAAGCAAUCAAACGCUUUU-UUGAUGAAUGCCCACUUGUAAGCUGUAAGAUUUCGCUUACUCAAAUA----- ....((((((((...((.((...((...((((..((.(((((.(((((........))))))-))))))..(((......))).))))...)).)).))..)))))))).----- ( -18.90) >consensus UUACAUUUAAGUUAUGUU____UUAAAUCAGUCACAAUUAAGU_AAGCAAUC_AUCGCUUUUAUUGAUUAAUU__CAGUCUUCAGCUGUA_GAUUCAGCUUACUCAAAUA____U ....((((((((((.......................((((...((((........))))...)))).................((((.......))))))))))))))...... ( -9.23 = -10.90 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:56 2006