Locus 5259

Sequence ID 2R_DroMel_CAF1
Location 17,121,444 – 17,121,535
Length 91
Max. P 0.902984
window8399

overview

Window 9

Location 17,121,444 – 17,121,535
Length 91
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 75.56
Mean single sequence MFE -29.03
Consensus MFE -20.93
Energy contribution -21.38
Covariance contribution 0.45
Combinations/Pair 1.22
Mean z-score -1.38
Structure conservation index 0.72
SVM decision value 1.03
SVM RNA-class probability 0.902984
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17121444 91 + 20766785
--UGCGAAAGUGGCCCAAAGAACUCUCUG---C-----UCUGCUUAGGGUUAUUUUUGGGCGUGA------------ACUCACACCUACACGCCCCUCU---GCGAGGUGCUAAUA
--.......(((((((((((((((((..(---(-----...))..)))))..)))))))))(((.------------...))).....)))((.((((.---..)))).))..... ( -31.10)
>DroSec_CAF1 57301 96 + 1
--UGCGAAAGUGGCCCAAGGAACUCUCUG---CUCCGCUCUGCUUAGGGUUAUUUUUGGGCGUGA------------ACUCACACCUACACGCCCCUCA---GCGAGGUGCUAAUA
--.......(((((((((((((((((..(---(........))..)))))..)))))))))(((.------------...))).....)))((.((((.---..)))).))..... ( -32.80)
>DroSim_CAF1 48106 96 + 1
--UGCGAAAGUGGCCCAAAGAACGCUCUG---CUCUGCUCUGCUUAGGGUUAUUUUUGGGCGUGA------------ACUCACACCUACACGCCCCUCU---GCGAGGUGCUAACA
--.......((((((((((((..((((((---(........))..)))))..)))))))))(((.------------...))).....)))((.((((.---..)))).))..... ( -31.50)
>DroEre_CAF1 62770 88 + 1
--UGCGAAAGUGGCUCAGAGCGACU-----------UCUUUUCUUAGGGUUAUUUUUGGGCGUGA------------ACUCACACCUACACGCCCCAUU---CCGAGGUGCUAAUG
--.(((((((((((((.(((.((..-----------...)).))).)))))))))))(((((((.------------...........)))))))....---.......))..... ( -23.90)
>DroYak_CAF1 64623 88 + 1
--UGCGAAAGUGGCUCAAAGAAGUC-----------GCUCUGCUUAGGGUUAUUUUUGGGCGUGA------------ACUCACACCUACACGCCCCACU---CUGAGGUGCUAAUA
--.(((..(((((((......))))-----------)))...((((((((.......(((((((.------------...........))))))).)))---))))).)))..... ( -27.60)
>DroAna_CAF1 69251 113 + 1
UCUCCGC-AGAAACCCA--GAAAUCUCCGAAGUGCCGCUUCGAUUAGGGUUAUUUUUGGGCGUGAUCGUUUCGGCCAACUCGCACCUACACGCCCCCCACUCCCAAGACGCUAAUA
.....((-...((((((--(....)).(((((.....)))))....)))))......(((((((...((..(((.....))).))...)))))))..............))..... ( -27.30)
>consensus
__UGCGAAAGUGGCCCAAAGAACUCUCUG___C___GCUCUGCUUAGGGUUAUUUUUGGGCGUGA____________ACUCACACCUACACGCCCCUCU___CCGAGGUGCUAAUA
...(((((((((((((.(((......................))).)))))))))))(((((((........................)))))))..............))..... (-20.93 = -21.38 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:22 2006