Locus 5257

Sequence ID 2R_DroMel_CAF1
Location 17,114,256 – 17,114,348
Length 92
Max. P 0.529798
window8397

overview

Window 7

Location 17,114,256 – 17,114,348
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.20
Mean single sequence MFE -33.48
Consensus MFE -26.45
Energy contribution -26.51
Covariance contribution 0.06
Combinations/Pair 1.28
Mean z-score -1.71
Structure conservation index 0.79
SVM decision value -0.01
SVM RNA-class probability 0.529798
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17114256 92 + 20766785
ACUUACUGUAGUAACUGGGGUCAUUCACAUCGUUUGUCUCGAUGUUGGCCUGAGCCUGGUGCAGCACUAGGAUGCUGC-----UCACCAGCAGGCAG
.....((((.....((.((((((...((((((.......)))))))))))).)).(((((((((((......))))))-----..)))))...)))) ( -34.60)
>DroSec_CAF1 50295 92 + 1
ACUUACUGUAGUAAUUGGGGUCAUUCACAUCGUUUGUCUCGAUGUUGGCCUGAGCCUGGUGCAGCAGCAGGAUGCUGC-----UCACCAGCAGGCAG
.....((((......(.((((((...((((((.......)))))))))))).)((.(((((.((((((.....)))))-----))))))))..)))) ( -38.40)
>DroSim_CAF1 41027 92 + 1
ACUUACUGUAGUAAUUGGGGUCAUUCACAUCGUUUGUCUCGAUGUUGGCCUGAGCCUGGUGCAGCACCAGGAUGCUGC-----UCACCAGCAGGCAG
.....((((.....((.((((((...((((((.......)))))))))))).))(((((((...)))))))...((((-----(....))))))))) ( -33.60)
>DroEre_CAF1 55520 92 + 1
ACUUACUGUACCAACUGGGGUCGUCCACUUCGUUUGUCUCGAUGUUGGCCUGGGCCUGGUGCAGCACCAGGAUGCUGC-----UCACCAGCAGGCAG
...........(((((.(((.((..(.....)..)).))).).))))(((((...(((((((((((......))))))-----..)))))))))).. ( -31.50)
>DroYak_CAF1 57417 92 + 1
ACUUACUGUACCAACUGGGGUCAUCCACUUCGUUUGUCUCGAUGUUGGCCUGAGCCUGGUGCAGCAUCAGGAUGCUGC-----UCACCAGCAGGCAG
...........(((((.(((.((..(.....)..)).))).).))))(((((...((((((((((((....)))))))-----..)))))))))).. ( -34.20)
>DroAna_CAF1 62028 95 + 1
ACUUACUGUACACUUCGGGGUCAUCCACAUUGUUUGUGUCAGUGUUCGCGGCGACCAUAUCCAGCAUU--GUUGUUGCGGCGGCCACCAGCAGGCAG
......(((...(....)((....))))).(((((((....(((..(((.(((((.(((........)--)).))))).)))..)))..))))))). ( -28.60)
>consensus
ACUUACUGUACUAACUGGGGUCAUCCACAUCGUUUGUCUCGAUGUUGGCCUGAGCCUGGUGCAGCACCAGGAUGCUGC_____UCACCAGCAGGCAG
.....((((.....((.((((((...((((((.......)))))))))))).)).(((((((((((......)))))).......)))))...)))) (-26.45 = -26.51 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:20 2006