Locus 5255

Sequence ID 2R_DroMel_CAF1
Location 17,101,016 – 17,101,126
Length 110
Max. P 0.940939
window8395

overview

Window 5

Location 17,101,016 – 17,101,126
Length 110
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 77.18
Mean single sequence MFE -37.92
Consensus MFE -27.08
Energy contribution -27.28
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.71
SVM decision value 1.31
SVM RNA-class probability 0.940939
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17101016 110 + 20766785
GAUGAUGAUGACGACUACGACUACGACUACGACGUCGACAUCAUGGGACGGAAAUGAGUGAAGCGUGACAUUUGCUGCUCCUGCGAUGUCACGCUACGCUGCU-CAGCGAC----
((((.(((((.((....((....))....)).))))).)))).((((.((....))((((.(((((((((((.((.......))))))))))))).)))).))-)).....---- ( -35.20)
>DroPse_CAF1 68352 87 + 1
-----------------------GGGCGAGGACGUCGCCAUCAUGGGACGGAAAUGAGUGAAGCGUGACAUUUGCUGCUCCGGCGAUGUCACGCUACGCUGCCGCUACGG-----
-----------------------.(((.....((((.((.....))))))......((((.(((((((((((.((((...))))))))))))))).))))))).......----- ( -38.90)
>DroYak_CAF1 42214 104 + 1
GAUGGCGACGAUG------AUGAUGACUACGACGUCGACAUCGUGGGACGGAAAUAAGUGAAGCGUGACAUUUGCUGCUCCUGCGAUGUCACGCCACGCUGCU-CAACGGC----
..(((((.....(------(((.((....)).))))(((((((..((((((...((((((........))))))))).)))..))))))).))))).((((..-...))))---- ( -38.30)
>DroAna_CAF1 48875 95 + 1
-------------------ACGAUGACGACGACGUCGACAUCAUGGGACGGAAAUGAGUGAAGCGUGACAUUUGCUGCUCCUGCGAUGUCACGCUACGCUGCU-CUUCGCCGCAU
-------------------..((((.((((...)))).))))(((((.((((...(((((.(((((((((((.((.......))))))))))))).)))).).-.)))))).))) ( -38.30)
>DroPer_CAF1 70216 87 + 1
-----------------------GGGCGAGGACGUCGCCAUCAUGGGACGGAAAUGAGUGAAGCGUGACAUUUGCUGCUCCGGCGAUGUCACGCUACGCUGCCGCUACGG-----
-----------------------.(((.....((((.((.....))))))......((((.(((((((((((.((((...))))))))))))))).))))))).......----- ( -38.90)
>consensus
___________________A__AGGACGACGACGUCGACAUCAUGGGACGGAAAUGAGUGAAGCGUGACAUUUGCUGCUCCUGCGAUGUCACGCUACGCUGCU_CUACGGC____
................................((((..........))))......((((.(((((((((((.((.......))))))))))))).))))............... (-27.08 = -27.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:19 2006