Locus 5253

Sequence ID 2R_DroMel_CAF1
Location 17,095,286 – 17,095,384
Length 98
Max. P 0.991139
window8390

overview

Window 0

Location 17,095,286 – 17,095,384
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 84.65
Mean single sequence MFE -34.58
Consensus MFE -26.00
Energy contribution -27.08
Covariance contribution 1.08
Combinations/Pair 1.04
Mean z-score -2.95
Structure conservation index 0.75
SVM decision value 2.25
SVM RNA-class probability 0.991139
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17095286 98 - 20766785
GAGGGCCAGGGUAUUUGGCCUUCGUUAAGGAUACUCUGAGAUACAUCUGUGCUCCUUUUUUAUUUGGCGUUGCUGAUGGGGGUCUGAAUGCUGUGGCU
...(((((.((((((..(((((((((((((((((...((......)).))).)))))........(((...))))))))))).)..)))))).))))) ( -35.50)
>DroSec_CAF1 32578 93 - 1
GAGGGCCAGGGUAUUUGGCCUUCGUUAAGGAUAU-----GAUACAUCCGUGCUCCUUUUUUAUUCGGCGUUGCUGAUGGGGGUCUGAAUGCUGUGGCU
...(((((.((((((..(((((((..((((((((-----(.......)))).)))))......(((((...))))))))))).)..)))))).))))) ( -35.90)
>DroSim_CAF1 32775 98 - 1
GAGGGCCAGGGUAUUUGGCCUUCGUUAAGGAUACUCUGAGAUACAUCCGUGCUCCUUUUUUAUUCGGCGUUGCUGAUGGGGGUCUGAAUGCUGUGGCU
...(((((.((((((..(((((((..((((((((...((......)).))).)))))......(((((...))))))))))).)..)))))).))))) ( -35.10)
>DroEre_CAF1 33117 94 - 1
GAGGGCCAGGGUAUUUGGGCUUCGUUAAGGAUGCGCUGGG---CAUCCGUGCUC-CUUUUUAUUUGGCAUUGCUGAUGGGGGUCUGAAUGCUGUGGCU
...(((((.((((((..((((((...(((((.((((.((.---...))))))))-))).....(..((...))..)..))))))..)))))).))))) ( -40.60)
>DroYak_CAF1 35059 77 - 1
GAGGGCCAGGGUAUUUGGCCUUCGUUAAGGAUC--------------------C-UUUUUUUUUUGGCGCUGCUGAUGGGGGUCUGAAUGCUGUAGCU
...(((.(.((((((..((((((((((.((..(--------------------(-..........))..))..))))))))).)..)))))).).))) ( -25.80)
>consensus
GAGGGCCAGGGUAUUUGGCCUUCGUUAAGGAUAC_CUG_GAUACAUCCGUGCUCCUUUUUUAUUUGGCGUUGCUGAUGGGGGUCUGAAUGCUGUGGCU
...(((((.((((((..(((((((((..((((............)))).................(((...))))))))))).)..)))))).))))) (-26.00 = -27.08 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:14 2006