| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,090,164 – 17,090,258 |
| Length | 94 |
| Max. P | 0.716891 |
| Location | 17,090,164 – 17,090,258 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.02 |
| Mean single sequence MFE | -44.43 |
| Consensus MFE | -34.13 |
| Energy contribution | -34.16 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.07 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17090164 94 - 20766785 -CUGCUUUGGAAUUGUUGGCGGUUCUUUGCCAGCGCCGUUGGCUAUUUGAGGCAAGAAGUUGGCCGGCGGGCUACGGCGGACAGCCAAAGCAGCU -(((((((((...((((.(((((.....)))(((.(((((((((((((........))).)))))))))))))...)).)))).))))))))).. ( -44.70) >DroSec_CAF1 27442 94 - 1 -CUGCUUUGGAAUUGUUGGCGGUUCUUUGCCAGCGCCUGCGGCUAUUUGAGGCAAGAAGUUGGCCGGCGGGCUCCGGCGGACAGCCAAAGCAGCU -((((((((((...((((((((....))))))))((((((((((((((........))).))))).)))))))))(((.....)))))))))).. ( -45.00) >DroSim_CAF1 27658 94 - 1 -CUGCUUUGGAAUUGUUGGCGGUUCUUUGCCAGCGCCUGCGGCUAUUUGAGGCAAGAAGUUGGCCGGCGGGCUCCGGCGGACAGCCAAAGCAGCU -((((((((((...((((((((....))))))))((((((((((((((........))).))))).)))))))))(((.....)))))))))).. ( -45.00) >DroEre_CAF1 27896 94 - 1 -CUGCUUUGGAAUUGUUGGCGGUUCCUUGCCACCGCCGGCGGCUAUUUGAGGCAAGAACUUGGCCGGCGGGCUCCGGCGGACAGUCAAAGCAGCU -((((((((..(((((((((((....))))))(((((((.((((..(((.(.(((....))).))))..)))))))))))))))))))))))).. ( -42.70) >DroYak_CAF1 29623 94 - 1 -CUGCUUUGGAAUUGUUGGCGGUUCUUUGCCACCGCCGGCGGCUAUUUGAGGCAAGAACUUGGCCCGAGGGCUCCGGCGGACAGCCAAAGCAGCU -(((((((((...(((((((((....))))))(((((((.((((.((((.(((.........))))))))))))))))))))).))))))))).. ( -47.30) >DroAna_CAF1 36265 95 - 1 GCCGCUUUGGCAUUGUUGGCGGUUCUUUGCCAUGGCCCGGAGCUAUUUGAGGCAAGAACUUGGCUCCCGGCCAUCGGCGGACAGCAAAAGCAGCU ((.(((((.((..((((.(((((.....)))((((((.((((((....(((.......))))))))).))))))..)).)))))).))))).)). ( -41.90) >consensus _CUGCUUUGGAAUUGUUGGCGGUUCUUUGCCAGCGCCGGCGGCUAUUUGAGGCAAGAACUUGGCCGGCGGGCUCCGGCGGACAGCCAAAGCAGCU .(((((((((...((((.(((((.....)))...(((.(((((((...............))))).)).)))....)).)))).))))))))).. (-34.13 = -34.16 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:13 2006