Locus 5250

Sequence ID	2R_DroMel_CAF1
Location	17,088,933 – 17,089,024
Length	91
Max. P	0.816379

overview

Window 7

Location	17,088,933 – 17,089,024
Length	91
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	82.01
Mean single sequence MFE	-30.74
Consensus MFE	-18.32
Energy contribution	-18.56
Covariance contribution	0.24
Combinations/Pair	1.18
Mean z-score	-2.21
Structure conservation index	0.60
SVM decision value	0.67
SVM RNA-class probability	0.816379
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17088933 91 + 20766785
UUGGCUAGCCUCCCCUCUCUCUGCCACCUCUUUGCGUUCAUAAUGCCGCCUGCUUUGGCCGCGUUUAUCG-GCUGCAAUUUAGUGGCUUGAA
..((....)).......((...(((((....((((((..(((((((.(((......))).))).))))..-)).))))....)))))..)). ( -27.00)
>DroSec_CAF1 26238 86 + 1
UUGGCUAGCCCC------CUCUACCACCUCUUUGCGGCCAUAAUGCCGGCUGCUUUGGCCGCGUUUAUCGGGCUGCAAUUUAGUGGCUUGAA
..((....))..------.((..((((....((((((((..(((((.((((.....))))))))).....))))))))....))))...)). ( -31.00)
>DroSim_CAF1 26444 86 + 1
UUGGCUAGCCCC------CUCUGCCGCCUCUUUGCGGCCAUAAUGCCGGCUGCUUUGGCCGCGUUUAUCGGGCUGCAAUUUAGUGGCUUGAA
..((....))..------.((.(((((....((((((((..(((((.((((.....))))))))).....))))))))....)))))..)). ( -34.40)
>DroEre_CAF1 26676 90 + 1
UUGGGCAGCCCC-GCUGACCCCCCAGCCCUCUUGUGGCCAUAAUGCCGCCUGCUUUGGCCGCGUUUAUCG-GCUGCAAUUUAGUGGCUUGAA
..(((((((...-)))).))).(.((((((.(((..(((..(((((.(((......))).)))))....)-))..)))...)).)))).).. ( -36.60)
>DroYak_CAF1 28426 87 + 1
UUGGCUAGCC---AGUGGCACCCCUCCCCU-UACUAACCGUAAUGCCGCCUGCUUUGGCCGCGUUUAUCG-GCUGCAAUUUAGUGGCUUGAA
..(((((((.---.((((((.........(-(((.....))))))))))..)))..)))).......(((-((..(......)..)).))). ( -24.70)
>consensus
UUGGCUAGCCCC___U__CUCUCCCACCUCUUUGCGGCCAUAAUGCCGCCUGCUUUGGCCGCGUUUAUCG_GCUGCAAUUUAGUGGCUUGAA
..((....)).......................(((((((....((.....))..))))))).....(((.((..(......)..)).))). (-18.32 = -18.56 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:11 2006