| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,075,629 – 17,075,728 |
| Length | 99 |
| Max. P | 0.991804 |
| Location | 17,075,629 – 17,075,728 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 94.33 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -23.22 |
| Energy contribution | -23.33 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.991804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17075629 99 + 20766785 GGGAAGUCUGG-CAGAAGUUGAGUGAGUGAGCGAGUAACUGGAGUCCCGGCAUAUACUGAAGCAGCAGAUAUUAAAACGCUGCAAGGCUUUCAAAAAUAA .((((((((.(-(((...((((....((..((.((((.((((....))))....))))...)).)).....))))....)))).))))))))........ ( -25.70) >DroPse_CAF1 44899 96 + 1 ACGAAGUCUGGGGAAAAGUUGAGUGAGUG----AGUAACUGGAGUCCCGGCAUACACUGAAGCAGCAGAUAUUAAAACGCUGCAAGGCUUUCAAAAAUAA ..(((((((.((((..(((((..(....)----..)))))....)))).............(((((............))))).)))))))......... ( -23.40) >DroSim_CAF1 13220 99 + 1 GGGAAGUCUGG-CAGAAGUUGAGUGAGUGAGCGAGUAACUGGAGUCCCGGCAUAUACUGAAGCAGCAGAUAUUAAAACGCUGCAAGGCUUUCAAAAAUAA .((((((((.(-(((...((((....((..((.((((.((((....))))....))))...)).)).....))))....)))).))))))))........ ( -25.70) >DroYak_CAF1 14881 99 + 1 GGGAAGUCUGG-CAGAAGUUGAGUGAGUGAGCGAGUAACUGGAGUCCCGGCAUAUACUGAAGCAGCAGAUAUUAAAACGCUGCAAGGCUUUCAAAAAUAA .((((((((.(-(((...((((....((..((.((((.((((....))))....))))...)).)).....))))....)))).))))))))........ ( -25.70) >DroAna_CAF1 14954 95 + 1 GGGAAGUCUGG-CAGAAGUUGAGUGAGUG----AGUAACUGGAGUCCCGGCAUAUACUGAAGCAGCAGAUAUUAAAACGCUGCAAGGCUUUCAAAAAUAA .((((((((.(-(((..((((..(.((((----.((..((((....)))).)).)))).)..)))).(.........).)))).))))))))........ ( -26.00) >DroPer_CAF1 46792 96 + 1 ACGAAGUCUGGGGAAAAGUUGAGUGAGUG----AGUAACUGGAGUCCCGGCAUACACUGAAGCAGCAGAUAUUAAAACGCUGCAAGGCUUUCAAAAAUAA ..(((((((.((((..(((((..(....)----..)))))....)))).............(((((............))))).)))))))......... ( -23.40) >consensus GGGAAGUCUGG_CAGAAGUUGAGUGAGUG____AGUAACUGGAGUCCCGGCAUAUACUGAAGCAGCAGAUAUUAAAACGCUGCAAGGCUUUCAAAAAUAA .((((((((.........((.((((.(((.........((((....))))))).)))).))(((((............))))).))))))))........ (-23.22 = -23.33 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:04 2006