Locus 5244

Sequence ID 2R_DroMel_CAF1
Location 17,072,805 – 17,072,896
Length 91
Max. P 0.563107
window8376

overview

Window 6

Location 17,072,805 – 17,072,896
Length 91
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 85.90
Mean single sequence MFE -27.03
Consensus MFE -20.13
Energy contribution -20.08
Covariance contribution -0.05
Combinations/Pair 1.17
Mean z-score -2.35
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.563107
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17072805 91 + 20766785
CAUUAUUUGACAUCUUUGC------------------------CUGGCGCAGGUUCUGGUUUUAAUGGCAAUGCCAUUAACUCUUAACUCUUGGCAUUGCACAUUUGCUGGGACG
...............((((------------------------.....))))((((..((...(((((((((((((...............))))))))).)))).))..)))). ( -28.76)
>DroSec_CAF1 10340 90 + 1
CAUUAUUUGACAUCUUUGC------------------------CUGGCGCAGG-UCUGGUUUUAAUGGCAAUGCCAUUAACUCUUAACUCUUGGCAUUGCACAUUUGCUGGGACG
.................((------------------------(((...))))-)(..((...(((((((((((((...............))))))))).)))).))..).... ( -25.66)
>DroSim_CAF1 10442 90 + 1
CAUUAUUUGACAUCUUUGC------------------------CUGGCGCAGG-UCUGGUUUUAAUGGCAAUGCCAUUAACUCUUAACUCUUGGCAUUGCACAUUUGCUGGGACC
................(((------------------------.....)))((-((..((...(((((((((((((...............))))))))).)))).))..).))) ( -25.76)
>DroEre_CAF1 10692 90 + 1
CAUUAUUUGACAUCUUUGC------------------------CUGGCGCAGG-UCUGGUUUUAAUGGCAAUGCCAUUAACUCUUAACUCUUGGCAUUGCACAUUUGCUGGGACG
.................((------------------------(((...))))-)(..((...(((((((((((((...............))))))))).)))).))..).... ( -25.66)
>DroYak_CAF1 11972 90 + 1
CAUUAUUUGACAUCUUUGC------------------------CUGACGCAGG-UCUGGUUUUAAUGGCAAUGCCAUUAACUCUUAACUCUUGGCAUUGCACAUUUGCUGGCACG
................(((------------------------(.(((....)-)).(((...(((((((((((((...............))))))))).)))).))))))).. ( -25.86)
>DroPer_CAF1 43973 114 + 1
CAUCAUUUGACAUCUUUCCGAACCUGAAGCUCUGCCUCGGAAUCCGGCUCUGG-UCUGGUUUUAAUGGCAAUGCCAUUAACUCAUGACUCUUGGCAUUGCAUAUUCCCGGGAAUA
..............((((((....(((((((..(((((((...))))....))-)..)))))))...(((((((((...............))))))))).......)))))).. ( -30.46)
>consensus
CAUUAUUUGACAUCUUUGC________________________CUGGCGCAGG_UCUGGUUUUAAUGGCAAUGCCAUUAACUCUUAACUCUUGGCAUUGCACAUUUGCUGGGACG
....................................................(.((..((...(((((((((((((...............))))))))).)))).))..)).). (-20.13 = -20.08 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:01 2006