Locus 5242

Sequence ID 2R_DroMel_CAF1
Location 17,059,375 – 17,059,475
Length 100
Max. P 0.999926
window8373

overview

Window 3

Location 17,059,375 – 17,059,475
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 96.02
Mean single sequence MFE -35.70
Consensus MFE -34.46
Energy contribution -34.66
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 0.97
SVM decision value 4.60
SVM RNA-class probability 0.999926
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17059375 100 + 20766785
CC-CCACGGAAACCAUCCCACCACCCGCUGCAGUUGCGCUUAUUUGCCUUCGCCUUCGUGACGCCACGAUGCGAGCUUAGAACAGCGCGGCAAUAGCGGCC
..-....(((.....)))......((((((..((((((((..((((..(((((..(((((....))))).)))))..))))..))))))))..)))))).. ( -37.30)
>DroSec_CAF1 153732 100 + 1
CC-CCUCGCAAGCCAUCCCACCACCCGCUGCAGUUGCGCUUAUUUGCCUUCGCCUUCGUGACGCCACGAUGCGAGCUUAGAACAGCGCGGCAAUAGCGGCC
..-...(....)............((((((..((((((((..((((..(((((..(((((....))))).)))))..))))..))))))))..)))))).. ( -35.90)
>DroSim_CAF1 162297 100 + 1
CC-CCUCGCAAACCAUCCCACCACCCGCUGCAGUUGCGCUUAUUUGCCUUCGCCUUCGUGACGCCACGAUGCGAGCUUAGAACAGCGCGGCAAUAGCGGCC
..-.....................((((((..((((((((..((((..(((((..(((((....))))).)))))..))))..))))))))..)))))).. ( -35.80)
>DroEre_CAF1 157972 100 + 1
CC-CCUCUGAAACCAACCCACCACCCGCUGCAGUUGCGCUUAUUUGCCUUCGCCUUCGUGACGCCACGAUGCGAGCAUAGAACAGCGCGGCAAUAGCAGCC
..-.......................(((((.((((((((....(((..((((..(((((....))))).)))))))......))))))))....))))). ( -33.60)
>DroYak_CAF1 167950 101 + 1
CCCCCACUGAAACCAUCCCACCACCCGCUGCAGUUGCGCUUAUUUGCCUUCGCCUUCGUGACGCCACGAUGCGAGCAUAGAACAGCGCGGCAAUAGCGGCC
........................((((((..((((((((....(((..((((..(((((....))))).)))))))......))))))))..)))))).. ( -35.90)
>consensus
CC_CCUCGGAAACCAUCCCACCACCCGCUGCAGUUGCGCUUAUUUGCCUUCGCCUUCGUGACGCCACGAUGCGAGCUUAGAACAGCGCGGCAAUAGCGGCC
........................((((((..((((((((..((((..(((((..(((((....))))).)))))..))))..))))))))..)))))).. (-34.46 = -34.66 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:58 2006