Locus 5241

Sequence ID 2R_DroMel_CAF1
Location 17,058,943 – 17,059,036
Length 93
Max. P 0.990616
window8372

overview

Window 2

Location 17,058,943 – 17,059,036
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 94.71
Mean single sequence MFE -27.84
Consensus MFE -23.88
Energy contribution -23.64
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -2.10
Structure conservation index 0.86
SVM decision value 2.22
SVM RNA-class probability 0.990616
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17058943 93 - 20766785
CAUUUCGCUCAGUGCCUGAACAAAGGCAAAUCAGGCAACGGCCACGAAGCGAAGAUGCAGCAACAAGGGGCACAUAAAGGCAGCAGCCUCUUG
..(((((((..((((((......))))......(((....)))))..))))))).........((((((((..............)))))))) ( -31.34)
>DroSec_CAF1 153314 93 - 1
CAUUUCUCUCAGUGCCUGAACAAAGGCAAAUCAGGCAACGGCCACGAAGCGAAGAUGCAGCAACAAGGGGCACAAAAAGGCAGCAGCCUCUUG
..((((.((..((((((......))))......(((....)))))..)).)))).........((((((((..............)))))))) ( -25.54)
>DroSim_CAF1 161866 93 - 1
CAUUUCUCUCAGUGCCUGAACAAAGGCAAAUCAGGCAACGGCCACGAAGCGAAGAUGCAGCAACAAGGGGCACAAAAAGGCAGCAGCCUCUUG
..((((.((..((((((......))))......(((....)))))..)).)))).........((((((((..............)))))))) ( -25.54)
>DroEre_CAF1 157461 90 - 1
CAUUUCUCGCAGUGCCUGAGCAAAGGCAAAUCAGGCAACGGCCACGAAACGAAGAUGCAGCAACAAGGGGCACAAAAAGGC---AGCCUCUUG
(((((.(((...(((((((((....))...))))))).((....))...))))))))......((((((((..........---.)))))))) ( -26.70)
>DroYak_CAF1 167482 90 - 1
CGUUUCUCGCAGUGCCUGAACAAAGGCAAAUCAGGCAACGGCCACGAAACGAAGAUGCAGCAACAAGGGGCACAGAAAGGC---AGCCUCUUG
((((((..((..(((((((...........)))))))...))...))))))............((((((((..........---.)))))))) ( -30.10)
>consensus
CAUUUCUCUCAGUGCCUGAACAAAGGCAAAUCAGGCAACGGCCACGAAGCGAAGAUGCAGCAACAAGGGGCACAAAAAGGCAGCAGCCUCUUG
..((((......(((((......))))).....(((....)))..))))..............((((((((..............)))))))) (-23.88 = -23.64 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:57 2006