Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,808,036 – 2,808,126 |
Length | 90 |
Max. P | 0.574448 |
Location | 2,808,036 – 2,808,126 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.44 |
Mean single sequence MFE | -39.28 |
Consensus MFE | -24.16 |
Energy contribution | -24.72 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.34 |
Structure conservation index | 0.62 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2808036 90 + 20766785 ---------CA------GCAGCUCAG---AGCAGUCUUUUUUAGGGCGGGGGGACCUGCGACCGCUAGUGUCGGGGUCCCCGAUUCGGCCGAGUCCGAGCAAUACUGC ---------..------...((((..---....(((((....)))))..((((((((.(((((....).))))))))))))(((((....))))).))))........ ( -37.30) >DroVir_CAF1 397 96 + 1 C---GGCAGCUC------CAGCACUG---AGCAGCCUUUUUUAGUGCAAGGGGGCCUGCGACCGCCUACGUCGGGGUCCCCUAUCAGCCCGAGUCCGAGCAGUACUGC .---(((.((((------.......)---))).))).....((((((.(((((((((.((((.......)))))))))))))....((.((....)).)).)))))). ( -41.10) >DroPse_CAF1 397 89 + 1 ----AGCAGCA------GCAGCUUGG---AGCAGUCUUUUUUAGGGAAGGGGGACCUGCGACCGCUUACGUCGGGGUCCCCAAUCAGGCC------GAGCAGUACUGC ----.((((..------((.((((((---......(((((....)))))((((((((.((((.......)))))))))))).......))------)))).)).)))) ( -37.00) >DroGri_CAF1 384 105 + 1 CGACACUGGCUCAUCCGCCAGCACUG---AGCAGCCUUUUUUAGUGCAAGGGGGCCUGCGACCGCCUACGUCGGGGUCCCCUAUCAGCCCGAGUCCGAGCAGUACUGC .(((.(.((((.........((((((---((........)))))))).(((((((((.((((.......)))))))))))))...)))).).)))...(((....))) ( -41.10) >DroAna_CAF1 14580 102 + 1 CAAGAGCAGCA------GCAGUCGAGAGGAUCAGUCUUUUUUAGGGCGGGGGGACCUGCGACCGCUAGUGUCGGGGUCCCCUAUCCGGCCGAGUCCGAGCAGUUCUGC ..(((((.((.------(.(.(((((((((....)))))))..((.(((((((((((.(((((....).))))))))))))...))).)))).).)..)).))))).. ( -42.20) >DroPer_CAF1 397 89 + 1 ----AGCAGCA------GCAGCUUGG---AGCAGUCUUUUUUAGGGAAGGGGGACCUGCGACCGCUUACGUCGGGGUCCCCAAUCAGGCC------GAGCAGUACUGC ----.((((..------((.((((((---......(((((....)))))((((((((.((((.......)))))))))))).......))------)))).)).)))) ( -37.00) >consensus ____AGCAGCA______GCAGCUCAG___AGCAGUCUUUUUUAGGGCAGGGGGACCUGCGACCGCUUACGUCGGGGUCCCCUAUCAGGCCGAGUCCGAGCAGUACUGC .................((((............(((((....)))))..((((((((.((((.......)))))))))))).......................)))) (-24.16 = -24.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:54 2006