Locus 524

Sequence ID 2R_DroMel_CAF1
Location 2,808,036 – 2,808,126
Length 90
Max. P 0.574448
window988

overview

Window 8

Location 2,808,036 – 2,808,126
Length 90
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.44
Mean single sequence MFE -39.28
Consensus MFE -24.16
Energy contribution -24.72
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.34
Structure conservation index 0.62
SVM decision value 0.08
SVM RNA-class probability 0.574448
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2808036 90 + 20766785
---------CA------GCAGCUCAG---AGCAGUCUUUUUUAGGGCGGGGGGACCUGCGACCGCUAGUGUCGGGGUCCCCGAUUCGGCCGAGUCCGAGCAAUACUGC
---------..------...((((..---....(((((....)))))..((((((((.(((((....).))))))))))))(((((....))))).))))........ ( -37.30)
>DroVir_CAF1 397 96 + 1
C---GGCAGCUC------CAGCACUG---AGCAGCCUUUUUUAGUGCAAGGGGGCCUGCGACCGCCUACGUCGGGGUCCCCUAUCAGCCCGAGUCCGAGCAGUACUGC
.---(((.((((------.......)---))).))).....((((((.(((((((((.((((.......)))))))))))))....((.((....)).)).)))))). ( -41.10)
>DroPse_CAF1 397 89 + 1
----AGCAGCA------GCAGCUUGG---AGCAGUCUUUUUUAGGGAAGGGGGACCUGCGACCGCUUACGUCGGGGUCCCCAAUCAGGCC------GAGCAGUACUGC
----.((((..------((.((((((---......(((((....)))))((((((((.((((.......)))))))))))).......))------)))).)).)))) ( -37.00)
>DroGri_CAF1 384 105 + 1
CGACACUGGCUCAUCCGCCAGCACUG---AGCAGCCUUUUUUAGUGCAAGGGGGCCUGCGACCGCCUACGUCGGGGUCCCCUAUCAGCCCGAGUCCGAGCAGUACUGC
.(((.(.((((.........((((((---((........)))))))).(((((((((.((((.......)))))))))))))...)))).).)))...(((....))) ( -41.10)
>DroAna_CAF1 14580 102 + 1
CAAGAGCAGCA------GCAGUCGAGAGGAUCAGUCUUUUUUAGGGCGGGGGGACCUGCGACCGCUAGUGUCGGGGUCCCCUAUCCGGCCGAGUCCGAGCAGUUCUGC
..(((((.((.------(.(.(((((((((....)))))))..((.(((((((((((.(((((....).))))))))))))...))).)))).).)..)).))))).. ( -42.20)
>DroPer_CAF1 397 89 + 1
----AGCAGCA------GCAGCUUGG---AGCAGUCUUUUUUAGGGAAGGGGGACCUGCGACCGCUUACGUCGGGGUCCCCAAUCAGGCC------GAGCAGUACUGC
----.((((..------((.((((((---......(((((....)))))((((((((.((((.......)))))))))))).......))------)))).)).)))) ( -37.00)
>consensus
____AGCAGCA______GCAGCUCAG___AGCAGUCUUUUUUAGGGCAGGGGGACCUGCGACCGCUUACGUCGGGGUCCCCUAUCAGGCCGAGUCCGAGCAGUACUGC
.................((((............(((((....)))))..((((((((.((((.......)))))))))))).......................)))) (-24.16 = -24.72 +   0.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:54 2006