Locus 5237

Sequence ID 2R_DroMel_CAF1
Location 17,045,987 – 17,046,104
Length 117
Max. P 0.733994
window8365

overview

Window 5

Location 17,045,987 – 17,046,104
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 86.84
Mean single sequence MFE -43.48
Consensus MFE -30.68
Energy contribution -31.60
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -2.02
Structure conservation index 0.71
SVM decision value 0.43
SVM RNA-class probability 0.733994
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17045987 117 - 20766785
UUCCAUCUGGAUCGCAAAUUCUGUGCCCAAAUCUUCGACCGGAAAAUAGGCUGGCCACACAUCUGUGCUGGCCAUUCGCAAUCCUCUACGUGCACCGGAGAUUCGGGUGGACCGUUG
.(((((((((((((((.......)))............((((......(..(((((((((....))).))))))..)(((..........))).)))).))))))))))))...... ( -42.80)
>DroSec_CAF1 139366 117 - 1
UACCACCUGGAUCGCGGAUACUGUGUCCAAAUCUUCGGCAGGGAAAUAGGCUGGCCACACAUCUGUGCUGGACAUUCGCAAUCCUUUACGUGCGCCGGCGAUUCUGGUGGUCCGUUG
.((((((.(((((((((((.....)))).......(((((((((....(..((.((((((....))).))).))..)....))))).......))))))))))).))))))...... ( -43.51)
>DroSim_CAF1 147902 117 - 1
UACCACCUGGAUCGCGGAUACUGUGUCCAAAUCUUCGGCAGGGAAAUAGGCUGGCCACACAUCUGUGCUGGCCAUUCGCAAUCCUUUACGUGCGCCGGCGAUUCUGGUGGUCCGUUG
.((((((.(((((((((((.....)))).......(((((((((....(..(((((((((....))).))))))..)....))))).......))))))))))).))))))...... ( -50.61)
>DroEre_CAF1 143611 117 - 1
UACCAUCUCGACCGCAGAUACUGUUUGCUCAACUUUAACUGGCAAAUAGGUUGGCCACACAUCUGUGCUGGCCAUUCGCAAUCCUCCGCGUGCACCGGAGAUUCGGGCGGUCCGUUG
.........((((((.....((((((((.((........))))))))))..(((((((((....))).)))))).(((.((((.((((.(....))))))))))))))))))..... ( -44.60)
>DroYak_CAF1 153083 117 - 1
UACCACCUCGAUCGCGGAUACUGUCACCAAAUCUUCGACCGGGCAAUAGGCUGGCCACACAUCUGUGCUGGCCACUCGCAAUCCUCCACGUGCACCGGAGAUUCUGGGGGUCCGUUG
.............((((((.......(((((((((((.(((((......(((((((((((....))).))))))...))......)).)).)...)))))))).)))..)))))).. ( -35.90)
>consensus
UACCACCUGGAUCGCGGAUACUGUGUCCAAAUCUUCGACAGGGAAAUAGGCUGGCCACACAUCUGUGCUGGCCAUUCGCAAUCCUCUACGUGCACCGGAGAUUCUGGUGGUCCGUUG
.((((((.(((((((((...))))..............((((......(..(((((((((....))).))))))..)(((..........))).)))).))))).))))))...... (-30.68 = -31.60 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:51 2006