| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,039,578 – 17,039,691 |
| Length | 113 |
| Max. P | 0.877942 |
| Location | 17,039,578 – 17,039,691 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.23 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -13.94 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17039578 113 - 20766785 GCAGCGAACAAUGCUGGCGACAACAAGCCUGCUCGAUUCCAGCGAAUGAAAAUAAUUAAAAAGCAAAACAAUAUAUAGAUAUAUAUUAAACGCACACAGCGGCGG--GCACAA---AA .(((((.....)))))..........((((((.((......(((.((....))................(((((((....)))))))...)))......))))))--))....---.. ( -24.40) >DroSim_CAF1 141035 104 - 1 -------ACAACGCUGGCGACAACCAGCCUGCUCGAUUCCAGCAAAUGAAAAUAAAUAAAAAGCCAAACAAUAUAUA--UAUAUAUUAAGCGCACACAGCGGCGG--GCACAA---AA -------.....(((((......))))).(((((..(((........)))............(((....((((((..--..))))))..((.......)))))))--)))...---.. ( -21.90) >DroYak_CAF1 146245 105 - 1 ------AACAACGCUGGCGACAACAAGCCUGCUCGAUUCCAGCGAAUGAAAAUAAAUAAUAAGCCAAACAAUAUA------UAUAUUAAAUACACACUGCGGCG-CAGCCGACAGCAA ------.....(((((((((((.......)).)))...))))))...............................------...............(((((((.-..)))).)))... ( -19.70) >consensus ______AACAACGCUGGCGACAACAAGCCUGCUCGAUUCCAGCGAAUGAAAAUAAAUAAAAAGCCAAACAAUAUAUA__UAUAUAUUAAACGCACACAGCGGCGG__GCACAA___AA ............((((((((((.......)).)))...)))))...................((.....(((((((....)))))))...(((.....)))))............... (-13.94 = -14.13 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:41 2006