Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,803,846 – 2,803,936 |
Length | 90 |
Max. P | 0.993554 |
Location | 2,803,846 – 2,803,936 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -34.16 |
Consensus MFE | -29.74 |
Energy contribution | -29.58 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.22 |
Mean z-score | -2.11 |
Structure conservation index | 0.87 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2803846 90 - 20766785 CGUUGGUACCAACAAUUGGCCAGGAUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG--AAGUCGGGCCGAGAUGCAUG .((((....)))).......((((......))))....(((((((((((.(((((..(.........)..--))))).)))))))))))... ( -38.00) >DroSec_CAF1 10656 90 - 1 CGUCGGCACCAACAAUUGGCCAGGCUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG--AAGUCGGGCCGAGAUGCAUG .((((((...........))).))).............(((((((((((.(((((..(.........)..--))))).)))))))))))... ( -37.20) >DroSim_CAF1 12045 90 - 1 CGUCGGCACCAACAAUUGGCCAGGCUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG--AAGUCGGGCCGAGAUGCAUG .((((((...........))).))).............(((((((((((.(((((..(.........)..--))))).)))))))))))... ( -37.20) >DroEre_CAF1 10871 91 - 1 CGUCGGCACCAACAAUUGGCCAUGGUAGAACUUGAAGAGCAUCUUGGCCAGACUUUUCUCCGUCGCUGUGAGACGUC-GGCUGAGUUGCAUG (((.(((...........))))))..............(((.((..(((.(((...((((((....)).)))).)))-)))..)).)))... ( -24.90) >DroYak_CAF1 10543 89 - 1 CGU-GGCACCAACAAUUGGCCAUGGUGGAACUUGAAGAGCAUCUUGGCCAGACUUUUCCUCGUCUAUGUG--GAGUCGGGCUGAGAUGCAUG (((-(((...........))))))..............((((((..(((.(((...(((.((....)).)--))))).)))..))))))... ( -33.50) >consensus CGUCGGCACCAACAAUUGGCCAGGCUAGAACUUGAAGAGCGUCUUGGCCAGACUUUUCUCCGUCUCUGGG__AAGUCGGGCCGAGAUGCAUG ....(((...........))).................(((((((((((.(((((...((((....))))..))))).)))))))))))... (-29.74 = -29.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:53 2006