| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,036,996 – 17,037,097 |
| Length | 101 |
| Max. P | 0.998894 |
| Location | 17,036,996 – 17,037,097 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.76 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -14.57 |
| Energy contribution | -13.47 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.53 |
| SVM decision value | 3.27 |
| SVM RNA-class probability | 0.998894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17036996 101 + 20766785 CGAGCCAGUUAAAUGUACAUCGCAUU-----------------UCUUAAUGAGAUACUUUAUUCUCAUUG--UUGCUAGCUGGUUAAGUAUAGUAUAUUUUUUUUACAGUGCUCAGAUUU ..((((((((((((((.....)))))-----------------...((((((((........))))))))--....))))))))).(((((.(((.........))).)))))....... ( -24.40) >DroEre_CAF1 134276 102 + 1 CGAGCCAGUGAAAUGUACAUCACAUU-----------UGUAGUUUUUAAUGGGAUUUUUUAAUUUCAUUA--CUGCCAUCUAGUUAAGC-UGGUAU----UUUUUUCAGUGCUGAGAUUU ...((((((.((((((.....)))))-----------)(((((....((((..(((....)))..)))))--))))...........))-))))..----...(((((....)))))... ( -22.50) >DroYak_CAF1 142301 115 + 1 CGAGCCAGUAAAAUGUACAUCACAUUAUUGAGGGCACUAAAGUUCUUAAUGAGAUAACGUGUUUUCAUUGUUUUGCUGGCUAGCUUAGC-UAGUAU----UUCUUACAGUGCUGAGAUUU ..(((((((((((((.((((....(((((((((((......)))))))))))......))))......)))))))))))))..((((((-..(((.----....)))...)))))).... ( -36.00) >consensus CGAGCCAGUAAAAUGUACAUCACAUU___________U__AGUUCUUAAUGAGAUAAUUUAUUUUCAUUG__UUGCUAGCUAGUUAAGC_UAGUAU____UUUUUACAGUGCUGAGAUUU ..............((((............................((((((((........))))))))...((((((((.....))).))))).............))))........ (-14.57 = -13.47 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:39 2006