| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,035,413 – 17,035,505 |
| Length | 92 |
| Max. P | 0.608926 |
| Location | 17,035,413 – 17,035,505 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.67 |
| Mean single sequence MFE | -21.14 |
| Consensus MFE | -14.79 |
| Energy contribution | -14.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17035413 92 - 20766785 ---GUAUA----UAGUAUU-----CCAGCAUUACUGCUGACCCCGAUGCUGGCCAACCCCCGGCACCCGCUAAACCAGCCGGCACCCCACAAACGUUGCCACUU ---.....----((((...-----.(((((....))))).......((((((.......))))))...))))........((((.(........).)))).... ( -20.60) >DroSec_CAF1 130056 88 - 1 ---GU-------UACCAU------UCAGCAUUACUGGUGACCCCGAUGCUGGCCAACCCCCGGCACCCGCUGAACCACCCGGCACCCCACAAACGUUGCCACUU ---..-------.....(------(((((......(....).....((((((.......))))))...))))))......((((.(........).)))).... ( -21.60) >DroYak_CAF1 140684 96 - 1 CAUGUACAUAGUAACCAUUCCGUUUCAGCAUUACUGGCGACCCCGAUGCUGGCCAACCCCC-----CUGCCA---GCCCCGGCACCCCACAAACGUUGCCACUU ..................................(((((((.(((..((((((........-----..))))---))..)))............)))))))... ( -21.22) >consensus ___GUA_A____UACCAUU_____UCAGCAUUACUGGUGACCCCGAUGCUGGCCAACCCCCGGCACCCGCUAAACCACCCGGCACCCCACAAACGUUGCCACUU ........................((((((((...(....)...))))))))............................((((.(........).)))).... (-14.79 = -14.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:38 2006