Locus 5223

Sequence ID 2R_DroMel_CAF1
Location 16,995,362 – 16,995,461
Length 99
Max. P 0.500000
window8341

overview

Window 1

Location 16,995,362 – 16,995,461
Length 99
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 78.39
Mean single sequence MFE -20.47
Consensus MFE -11.63
Energy contribution -11.77
Covariance contribution 0.14
Combinations/Pair 1.12
Mean z-score -1.57
Structure conservation index 0.57
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16995362 99 + 20766785
UUCUUCAGCUCCUCGGAAUCCUGUCCCUCCACGGCGGUCAUCUGCUUCUUUAGAUACUCGCUGACCUUUAGAGGAGAGAUAUAAU---AUCCAG--CAUUAAUU-
........(((((((((......))).....(((((((.(((((......))))))).))))).......)))))).........---......--........- ( -24.10)
>DroSim_CAF1 98696 97 + 1
UUCUUCAGCUCCUCGGAAUCCUGUCCCUCCACGGCGGUCAUCUGCUUCUUCAGAUACUCGCUGACCUAUAGAACAAAA--AUAAU---AUCCAA--CAUUAAUU-
((((..((......(((......))).....(((((((.(((((......))))))).)))))..))..)))).....--.....---......--........- ( -16.30)
>DroEre_CAF1 93634 97 + 1
UUCUUCAGCUCAUCGGAAUCCUGUCCCUCGACGGCGGUCAUCUGCUUCUUCAGAUACUCGCUGACCUGUAGCGCAUAA--AUGAC---AUUCAA--AAUGAGUU-
......(((((((..((((((((((....))))).)((((((((......)))))...(((((.....))))).....--..)))---))))..--.)))))))- ( -23.50)
>DroYak_CAF1 100240 98 + 1
UUCUUCAGCUCAUCGGAAUCCUGUCCCUCCACGGCGGUCAUCUGCUUCUUCAGAUACUCGCUGACCUGUAGCGCAUAA--ACAAU---ACCACA--AAUUAGUUC
.......(((((..(((......))).....(((((((.(((((......))))))).)))))...)).)))......--.....---......--......... ( -18.30)
>DroMoj_CAF1 141800 101 + 1
UUCUUCAGCUCAUCAGAGUCCUGACCCUCCACAGCGGUCAUCUGUUUCUUCAGAUAUUCGCUGACCUAAACAGAC-AA--ACGAAACAAACCAACCGACAUAUU-
(((.(((((((....)))..)))).......((((((..(((((......)))))..))))))............-..--..)))...................- ( -20.10)
>DroAna_CAF1 109019 97 + 1
UUCUUCAGCUCAUCCGAGUCCUGGCCCUCCACAGCAGUCAUCUGUUUCUUCAAAUAUUCACUGACCUGGGAAGGGUUA--AUAAA---UUAUAG--AAUUAGUU-
...(((.((((....))))..(((((((((.(((((((....(((((....)))))...))))..))))).)))))))--.....---.....)--))......- ( -20.50)
>consensus
UUCUUCAGCUCAUCGGAAUCCUGUCCCUCCACGGCGGUCAUCUGCUUCUUCAGAUACUCGCUGACCUGUAGAGCAUAA__AUAAU___AUCCAA__AAUUAAUU_
.....(((.((....))...)))........((((((..(((((......)))))..)))))).......................................... (-11.63 = -11.77 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:28 2006