Locus 5222

Sequence ID 2R_DroMel_CAF1
Location 16,990,230 – 16,990,330
Length 100
Max. P 0.546511
window8340

overview

Window 0

Location 16,990,230 – 16,990,330
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 85.20
Mean single sequence MFE -39.88
Consensus MFE -33.00
Energy contribution -34.87
Covariance contribution 1.86
Combinations/Pair 1.16
Mean z-score -1.57
Structure conservation index 0.83
SVM decision value 0.03
SVM RNA-class probability 0.546511
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16990230 100 - 20766785
ACCUGAACUUCACUCGUUUUCUCAUCUUCGGGGGGCGUUGCUAGCUCCUCCGAGUGACUGCCAUUGCUCACGGGCGACGGACCCGACGAGAAGGUGGAAC
........((((((....(((((.((((((((((((.......)).))))))))......((.(((((....))))).))....)).))))))))))).. ( -33.80)
>DroSec_CAF1 86719 100 - 1
ACCUGAACUUCACUCGUUUUCUCGUCUUCGGGGGGCGUUACUAGCUCCUCUGAGUGACUGCCGUUGCUCACGGGCGACGGACCCGACGAGAAGGUGGAAC
........((((((....((((((((((((((((((.......)).))))))))......((((((((....))))))))....)))))))))))))).. ( -43.00)
>DroSim_CAF1 92718 100 - 1
ACCUGAACUUCACUCGUUUUCUCGUCUUCGGGGGGCGUUGCUAGCUCCUCCGAGUGACUGCCGUUGCUCACGGGCGACGGACCCGACGAGAAGGUGGAAC
........((((((....((((((((((((((((((.......)).))))))))......((((((((....))))))))....)))))))))))))).. ( -45.20)
>DroEre_CAF1 88489 100 - 1
ACCUGUACUUCACUUGGUUUCUCGUUUUCGGGGGACGUUGCUAGCUCCUCCGAGUGACUGCCGUUGCUCACGGGCGACGGACCCGACGAGAAGGUGGAAC
........((((((....(((((((((((((((((.((.....)))))))))))......((((((((....))))))))....)))))))))))))).. ( -41.60)
>DroYak_CAF1 95076 100 - 1
ACCUGAACCCCACUUGGUUUCUCGUUUUCAGGGGGCGUUGCUAGCUCCUCCGAGCGGCUGCCGUUGCUCACGGGCGACGGACCCGACGAGAAGGUGGAAC
.........(((((....(((((((.....(((((.((.....)).)))))...(((...((((((((....))))))))..)))))))))))))))... ( -41.90)
>DroAna_CAF1 104049 84 - 1
----GGACU------------UCAUUCUCCGGCGGCGUUGAUAGCUCCUCCGAGUGGCUGCCAUUGCUGACGGGCGAUGGUCCCGAGGAGAAAGUCGAGC
----.((((------------(..((((((((.((.((.....)).)).)))...((..(((((((((....))))))))).)))))))..))))).... ( -33.80)
>consensus
ACCUGAACUUCACUCGUUUUCUCGUCUUCGGGGGGCGUUGCUAGCUCCUCCGAGUGACUGCCGUUGCUCACGGGCGACGGACCCGACGAGAAGGUGGAAC
........((((((....((((((((((((((((((.......))))).)))))......((((((((....))))))))....)))))))))))))).. (-33.00 = -34.87 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:27 2006