Locus 5221

Sequence ID 2R_DroMel_CAF1
Location 16,986,138 – 16,986,241
Length 103
Max. P 0.625064
window8339

overview

Window 9

Location 16,986,138 – 16,986,241
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 80.68
Mean single sequence MFE -21.41
Consensus MFE -5.89
Energy contribution -8.33
Covariance contribution 2.44
Combinations/Pair 1.14
Mean z-score -2.24
Structure conservation index 0.28
SVM decision value 0.19
SVM RNA-class probability 0.625064
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16986138 103 - 20766785
UUCUUGUUAUCUAGCGCAAUUACUCACAUUAAGAUUUAUUGGCUGAUAAUAAAACCAGCUAAUGAAUCAGGCCGCAAGCCCAAAGGGCAAUAUUAAUGUCUCC
...((((........))))......((((((((((((((((((((..........))))))))))))).........((((...))))....))))))).... ( -27.10)
>DroSec_CAF1 82693 103 - 1
UUCGUGUUAUCUAGCGCAAUUACUCACAUUAAGAUAUAUUGGCUGAUAAUAAAACCCGCUAAUGAAUCAGCCCACAAGCCCAAAGGGCAAUAUUAAUGUCUCC
...(((((....)))))........(((((((........(((((((..................))))))).....((((...))))....))))))).... ( -23.07)
>DroSim_CAF1 88632 103 - 1
UUCGUGUUAUCUAGCGCAUUUACUCACAUUAAGAUAUAUUGGCUGAUAAUAAAACCCGCUAAUGAAUCACCCCACAAGCCCAAAGGGCAAUAUUAAUGUCUCC
...(((((....)))))........((((((((((.(((((((.(..........).))))))).))).........((((...))))....))))))).... ( -22.30)
>DroEre_CAF1 84339 93 - 1
UUCUUGUUAUCUAGAGCAAUUACUCAAGUU----------AGAGGAUAAUAAAACUCAAUAAUGAAUCAGCCCACAAGCGCAAGGGGCAUUAUUAAUGACCCU
...((((((((..((....)).(((.....----------.)))))))))))...(((.((((((....((((.....(....))))).)))))).))).... ( -17.30)
>DroYak_CAF1 90906 99 - 1
UUCUUGUUAUCUACAGCAAUUAC---AGUUAACAUGUAUAAGUUGAUUAUUAAACUCACUAAUGCAUCAGCCCACAAGCCCAAAGGGC-UUAUUAUUAUCGCU
..............(((...(((---(.......))))...(((((((((((.......))))).))))))....((((((...))))-)).........))) ( -17.30)
>consensus
UUCUUGUUAUCUAGCGCAAUUACUCACAUUAAGAUAUAUUGGCUGAUAAUAAAACCCGCUAAUGAAUCAGCCCACAAGCCCAAAGGGCAAUAUUAAUGUCUCC
...((((........))))......(((((((........(((((((..................))))))).....((((...))))....))))))).... ( -5.89 =  -8.33 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:26 2006