Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,982,472 – 16,982,599 |
Length | 127 |
Max. P | 0.895124 |
Location | 16,982,472 – 16,982,567 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -19.21 |
Consensus MFE | -8.64 |
Energy contribution | -9.28 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.06 |
Mean z-score | -2.69 |
Structure conservation index | 0.45 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16982472 95 - 20766785 UGUACAUACAUAUGUAUGU----------------GCGUACGGUGGAAUCUGCUUCUUGCCAUCUACUCCCACUCUUAGCUCAACUCUUCCUCUGUGUCUUCUUCUCCGCC .((((((((....))))))----------------))....((((((....((.....))..........(((.....................)))........)))))) ( -19.80) >DroSec_CAF1 79022 95 - 1 UGUACAUACAUAUGUAUGU----------------GCGUGCGGUGGAAUCUGCUUCUUGCCAUCUACUCCCACUCUUAGCUCAACUCUUCCUCUGUAACUUCCUCUCCACC .((((((((....))))))----------------)).(((((.((((...(((.......................))).......)))).))))).............. ( -19.10) >DroSim_CAF1 84866 95 - 1 UGUACAUACAUAUGUAUGU----------------GCGUGCGGUGGAAUCUGCUUCUUGCCAUCUACUCCCACUCUUAGCUCAACUCUUCCUCUGUAUCUUCCUCUCCACC .((((((((....))))))----------------))((((((.((((...(((.......................))).......)))).))))))............. ( -19.90) >DroEre_CAF1 80584 100 - 1 UGAACAUACAUACAUAUGUACAUGCAUAUGC-----------GUGUAUUCUGCUUCUUGCCAUCUACUCCCACUCUUAGCUCAACUCUUCCUCUGUGUCUUCUCCUCCACC .(((.(((((.......((((((((....))-----------))))))...((.....)).................................))))).)))......... ( -14.90) >DroYak_CAF1 87443 108 - 1 UGUACAUACAUACAUAUGUACAUAUGGAUGUAUGUUUGUACGGUGGAUUCUGC---UUGCCAUCUACUCCCACUCUUAGCUCAACUCUUCCUCUGUGUCUUCUCCUCCACC .(((((.((((((((.(((....))).)))))))).)))))((((((....((---(....................)))...((.(.......).)).......)))))) ( -22.35) >consensus UGUACAUACAUAUGUAUGU________________GCGUACGGUGGAAUCUGCUUCUUGCCAUCUACUCCCACUCUUAGCUCAACUCUUCCUCUGUGUCUUCUUCUCCACC ...((((((....))))))......................((((((....((.....)).......................((.........)).........)))))) ( -8.64 = -9.28 + 0.64)
Location | 16,982,509 – 16,982,599 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.90 |
Mean single sequence MFE | -22.31 |
Consensus MFE | -16.38 |
Energy contribution | -16.22 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.53 |
Structure conservation index | 0.73 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16982509 90 + 20766785 AGUGGGAGUAGAUGGCAAGAAGCAGAUUCCACCGUACGC----------------ACAUACAUAUGUAUGUACACGUUGUUCGUCAGUAAACCGCAAAACGAGACA .((((.....(((((((((((.....)))....(((((.----------------((((....)))).)))))...))).)))))......))))........... ( -18.90) >DroSec_CAF1 79059 90 + 1 AGUGGGAGUAGAUGGCAAGAAGCAGAUUCCACCGCACGC----------------ACAUACAUAUGUAUGUACAAGUUGUCCGUCAGUAAACCGCAAAACGAAACA .((((.....((((((((...((.(......).))..(.----------------((((((....)))))).)...))).)))))......))))........... ( -20.70) >DroSim_CAF1 84903 90 + 1 AGUGGGAGUAGAUGGCAAGAAGCAGAUUCCACCGCACGC----------------ACAUACAUAUGUAUGUACAAGUUGUCCGUCAGUAAACCGCAAAACGAAACA .((((.....((((((((...((.(......).))..(.----------------((((((....)))))).)...))).)))))......))))........... ( -20.70) >DroEre_CAF1 80621 95 + 1 AGUGGGAGUAGAUGGCAAGAAGCAGAAUACAC-----------GCAUAUGCAUGUACAUAUGUAUGUAUGUUCAAGUUGUCCGUCAGUAAACCGCAAAACGAAACA .((((.....((((((((........(((((.-----------.((((((......))))))..))))).......))).)))))......))))........... ( -25.86) >DroYak_CAF1 87480 103 + 1 AGUGGGAGUAGAUGGCAA---GCAGAAUCCACCGUACAAACAUACAUCCAUAUGUACAUAUGUAUGUAUGUACAAGUUGUCCGUCAGUAAACCGCAAAACGAAACA .((((.....((((((((---...(....)...(((((.((((((((............)))))))).)))))...))).)))))......))))........... ( -25.40) >consensus AGUGGGAGUAGAUGGCAAGAAGCAGAUUCCACCGCACGC________________ACAUACAUAUGUAUGUACAAGUUGUCCGUCAGUAAACCGCAAAACGAAACA .((((.....((((((((...((.(......).))....................((((((....)))))).....))).)))))......))))........... (-16.38 = -16.22 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:25 2006