Locus 5217

Sequence ID 2R_DroMel_CAF1
Location 16,977,488 – 16,977,595
Length 107
Max. P 0.938985
window8332

overview

Window 2

Location 16,977,488 – 16,977,595
Length 107
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 71.82
Mean single sequence MFE -25.03
Consensus MFE -10.97
Energy contribution -12.45
Covariance contribution 1.48
Combinations/Pair 1.26
Mean z-score -2.14
Structure conservation index 0.44
SVM decision value 1.30
SVM RNA-class probability 0.938985
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16977488 107 + 20766785
UAUCUAUCCACUGCCACU---GAGUUAGUUGAUUAAUUUUUCUGAAAUCUCAAAUCAAUUUAGCCUCAAGUGCAGCCAACAGCAAACUGCUGAUGGUGUUCUUCCC---AUCU------
..........((((.(((---(((..((((((((........(((....)))))))))))....))).)))))))(((.((((.....)))).)))..........---....------ ( -22.90)
>DroSec_CAF1 74212 106 + 1
UAUCUAUCCACUGCCGCU---GAGUUAGUUGAUUAAUUU-UGAGAAAUCUCAAAUCAAUUUAGCUUCAAGUGCAGCCAACAGCAAACUGCUGAUGGUU--C-CCCCUUCUUUU------
..........((((.(((---(((((((((((((.....-((((....)))))))))).)))))))..)))))))(((.((((.....)))).)))..--.-...........------ ( -27.30)
>DroSim_CAF1 79421 107 + 1
UAUCUAUCCACUGCCACU---GAGUUAGUUGAUUAAUUU-UGAGAAAUCGCAAAUCAAUUUAGCUUCAAGUGCAGCCAACAGCAAACUGCUGAUGGUU--CUCCCCUUCUUCU------
..........((((.(((---(((((((((((((.....-(((....)))..)))))).)))))))..)))))))(((.((((.....)))).)))..--.............------ ( -25.80)
>DroEre_CAF1 75533 109 + 1
UAU----UAACUGGCGCU---GAGUUAGCUGAUUAAUUU-UGAGAAAUCUCAAAUCAAUUUAGGUUCAAGUGCAUUACACAGCCAUCUGCUGACGGUU--CUGUCCCUCUUUUGCCACU
...----....(((((..---((((((((.(((....((-((((....))))))........((((...(((.....)))))))))).))))))((..--....)).))...))))).. ( -26.60)
>DroYak_CAF1 82398 109 + 1
UAU----UAACUGCCAUU---GAAUUAGAUGAUUAAUUU-UGAGAAAUCUGAAAUCAAUUUAGGUUAGAGUGCAUCAAACAGCAAACUACUGAUGGUU--UUGUCCCUCUUUUGCCACC
...----........(((---((.((((((..(((....-)))...))))))..)))))...(((.((((.(.((.((((..((......))...)))--).)).)))))...)))... ( -16.70)
>DroAna_CAF1 92355 106 + 1
UCUGG---AGCUGAGACUGGGGGGUUAGUUGAUUAAUUU-UGAGAAAUCUCAAAUCAAUUUAACUCCAAGUGUGUCG---------CUUCAGUUGCUGUUUUAUAUAUAUUUUUUCUCC
.((((---(((.((.((...((((((((((((((.....-((((....)))))))))).))))))))....)).)))---------))))))........................... ( -30.90)
>consensus
UAUCU__CAACUGCCACU___GAGUUAGUUGAUUAAUUU_UGAGAAAUCUCAAAUCAAUUUAGCUUCAAGUGCAGCCAACAGCAAACUGCUGAUGGUU__CUCCCCCUCUUUU______
...........((.((((...(((((((((((((......((((....)))))))))).)))))))..)))))).....((((.....))))........................... (-10.97 = -12.45 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:20 2006