Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,973,578 – 16,973,669 |
Length | 91 |
Max. P | 0.806088 |
Location | 16,973,578 – 16,973,669 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 86.29 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -18.20 |
Energy contribution | -18.80 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.09 |
Mean z-score | -1.92 |
Structure conservation index | 0.76 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16973578 91 - 20766785 AAA----AAUAGGCGACGGAGGUGCUGGAGCUGGUUUGUGG-------AUGACAGAGGGGCUGCAGAAGAUGUAGGACGAAGAGUUCGUAGAACUUUUGCGC ...----.....(((.(((((((.(((.((((..(((((..-------...)))))..)))).)))........((((.....)))).....)))))))))) ( -26.90) >DroSec_CAF1 70396 91 - 1 AAA----AAAAGGCGACAGAGGUGCUGGAGCUGGUUUGUGG-------AUGGCAGAGGGGCUGCAGAAGAUGUAGGACGAAGAGUUCGUAGAACUUUUGCAC ..(----((..(((..(((.....)))..)))..)))....-------...(((((((..(((((.....)...((((.....))))))))..))))))).. ( -25.10) >DroSim_CAF1 75739 92 - 1 AAA---AAAAAGGCGACGGAGGUGCUGGAGCUGGUUUGUGG-------AUGGCAGAGGGGCUGCAGAAGAUGUAGGACGAAGAGUUCGUAGAACUUUUGCAC ...---(((..(((..(((.....)))..)))..)))....-------...(((((((..(((((.....)...((((.....))))))))..))))))).. ( -24.40) >DroEre_CAF1 71720 102 - 1 AAAUAAAAAAAGGCGACGGAGGUGCUGGAGUUGGUUUGUGGAUAUCAGAGAGCAGAGGGGCACCAGAAGAUGUAGGACGAAGAGUUCGUAGAACUUUUGCAC ............((((.((.((((((....(((.(((.((.....)).))).)))...))))))..........((((.....))))......)).)))).. ( -24.40) >DroYak_CAF1 78497 85 - 1 --------AAAGGCGACGGAGGUGCUGGAGUUUGGUU---------AGAUGGCAGAGGGGCACCAGAAGAUGUAGGACGAAGAGUUCGUAGAACUUUUGCAC --------....((((.((.((((((....((((.(.---------....).))))..))))))..........((((.....))))......)).)))).. ( -19.50) >consensus AAA____AAAAGGCGACGGAGGUGCUGGAGCUGGUUUGUGG_______AUGGCAGAGGGGCUGCAGAAGAUGUAGGACGAAGAGUUCGUAGAACUUUUGCAC ...........(((..(((.....)))..)))...................(((((((..(((((.....)...((((.....))))))))..))))))).. (-18.20 = -18.80 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:19 2006