| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,971,649 – 16,971,744 |
| Length | 95 |
| Max. P | 0.795903 |
| Location | 16,971,649 – 16,971,744 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 90.23 |
| Mean single sequence MFE | -16.45 |
| Consensus MFE | -11.56 |
| Energy contribution | -11.88 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16971649 95 + 20766785 CAAAAACCGGAGUAAAUAUUAAACAAAAAAUGCAGCAUAAAAUGCAAUAAAAUGAAACAUUCCAUUGUUUUAAUAACAAUUGCCUGGGGAU-AAUA ......((((.((((...............((((........))))......(((((((......))))))).......))))))))....-.... ( -16.90) >DroSim_CAF1 73862 95 + 1 CAAAAACUGGAGUAAAUAUUAAACAAAAAAUGCAGCAUAAAAUGCAAUAAAAUGAAACAUUCCAUUGUUUUAAUAACAAUUGCCUGGGGAU-AAUA ......(..(.((((...............((((........))))......(((((((......))))))).......)))))..)....-.... ( -14.30) >DroEre_CAF1 69863 95 + 1 CAAAAACCAAAGUAAAUAUUAAACAAAAAAUGCAGCAUGAAAUGCAAUAAAAUGAAACACUCCUUUGUUUUAAAAACAAUUGCCCGGGGGA-AAUA ......((...((((...............((((........))))......(((((((......))))))).......))))...))...-.... ( -12.10) >DroYak_CAF1 72054 95 + 1 CAAAAACCCAAGUAAAUAUUAAACAAAAAAUGCAGCAUGAGCUGCAAUAAAAUGAAACACUUCUUUGUUUUAA-AAUAAUUGCCCGGGGGAAAAUA ......(((..((((.((((..........((((((....))))))......(((((((......))))))).-)))).))))...)))....... ( -22.50) >consensus CAAAAACCGAAGUAAAUAUUAAACAAAAAAUGCAGCAUAAAAUGCAAUAAAAUGAAACACUCCAUUGUUUUAAUAACAAUUGCCCGGGGAA_AAUA ......((.(.((((...............((((........))))......(((((((......))))))).......)))).).))........ (-11.56 = -11.88 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:18 2006