| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,964,989 – 16,965,096 |
| Length | 107 |
| Max. P | 0.848016 |
| Location | 16,964,989 – 16,965,096 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -15.59 |
| Energy contribution | -16.78 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16964989 107 - 20766785 GGAAAUUUUUCUUCCUCUCUUU----UUUUUUGCUUAUUGAUAUCAAAAGUUUAAGUGCAGCUUUGGAGGGAGCUUACAUUAUGCUUUGGCCAGGCUCAGUGCGCUUAUCC ((((.......)))).......----......((((.(((....))))))).((((((((((((.((..(((((.........)))))..))))))....))))))))... ( -24.70) >DroVir_CAF1 98148 97 - 1 -----UUUUGCUUGGUGU--------CCCUUUCCUUAUUGAUAUCAAAAGUUUAAGUGCAGCUUUGGCA-GCGCUUACAUUUUGCUUUGACUUAGCUCAGAGCGCUUAUCC -----....((.((((((--------(............)))))))(((((.(((((((.((....)).-))))))).)))))(((((((......)))))))))...... ( -26.60) >DroGri_CAF1 94780 92 - 1 -----UUUUGCUUGGCGU--------CCUUUUCUUUAUUGAUAUCAAAAGUUUAAGUGCAGCUUUGGCA-GCGCUUACAUUUGGCUUU-----AGCUCAGUGCGCUUAUCC -----........((((.--------.((..................((((.(((((((.((....)).-))))))).))))(((...-----.))).))..))))..... ( -20.20) >DroSim_CAF1 65835 105 - 1 AGAAAUUUUUCUUUCCCUUUU------UUUUUGCUUAUUGAUAUCAAAAGUUUAAGUGCAGCUUUGGAGGGAGCUUACAUUAUGCUUUGGCCAGGCUCAGUGCGCUUAUCC .((((......))))......------.....((((.(((....))))))).((((((((((((.((..(((((.........)))))..))))))....))))))))... ( -22.40) >DroYak_CAF1 65322 96 - 1 -----------UUCCUUC----UUUUUUUUGUGCUUAUUGAUAUCAAAAGUUUAAGUGCAGCUUUGGUAGGAGCUUACAUUAUGCUUUGGCCAGGCUCAGUGCGCUUAUCC -----------.......----..........((((.(((....))))))).((((((((((((.(((..((((.........))))..)))))))....))))))))... ( -23.70) >DroAna_CAF1 66292 100 - 1 -----UUUU--UUUCUCC----AUUUUUUAGUGCUUAUUGAUAUCAAAAGUUUAAGUGCAGCUUUGGCAGGAGCUUACAUUAUGCUUUGGCCAGGCUCAGUGCGCUUAUCC -----....--.......----..........((((.(((....))))))).((((((((((((.(((..((((.........))))..)))))))....))))))))... ( -25.30) >consensus _____UUUU_CUUCCUCU________UUUUUUGCUUAUUGAUAUCAAAAGUUUAAGUGCAGCUUUGGCAGGAGCUUACAUUAUGCUUUGGCCAGGCUCAGUGCGCUUAUCC ................................((((.(((....))))))).((((((((((((.((..(((((.........)))))..)))))))....)))))))... (-15.59 = -16.78 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:17 2006