Locus 5213

Sequence ID 2R_DroMel_CAF1
Location 16,963,358 – 16,963,449
Length 91
Max. P 0.890755
window8328

overview

Window 8

Location 16,963,358 – 16,963,449
Length 91
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 83.91
Mean single sequence MFE -22.66
Consensus MFE -15.24
Energy contribution -14.62
Covariance contribution -0.62
Combinations/Pair 1.17
Mean z-score -2.25
Structure conservation index 0.67
SVM decision value 0.96
SVM RNA-class probability 0.890755
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16963358 91 - 20766785
AAAAUGUACCGCAAAAUGUGCGGCAAAACAAUAAGUAUAUUUUUGUAGCUAGCUUUCUAACUUUCUAACUUGGUGCAUUUCAAAUAAAAUG--------------
.((((((((((((((((((((.............))))).))))))((.(((....))).)).........)))))))))...........-------------- ( -16.52)
>DroSec_CAF1 60256 96 - 1
AAAAUGUACCACAAAGUGUGCGGCAAAACAAUAAGUAUAUUUUUGUGGCUAGCG----CACUUUCUAACUUGGUGCAUUUCAAAUAACAUGGCUGU-----AUGU
.((((((((((.((((((((((((...((((.((.....)).)))).))).)))----))))))......))))))))))......(((((....)-----)))) ( -28.30)
>DroSim_CAF1 64194 96 - 1
AAAAUGUACCACAAAGUGUGCGGCAAAACAAUAAGUAUAUUUUUGUGGCUAGCG----CACUUUCUAACUUGGUGCAUUUCAAAUAACAUGUAUGU-----AUGU
.((((((((((.((((((((((((...((((.((.....)).)))).))).)))----))))))......))))))))))......(((((....)-----)))) ( -28.40)
>DroEre_CAF1 61686 100 - 1
AAAAUGUACCACAAAAUGUGUGGCAAAACAAUAAGUAUAUUUUUGUAGCUAGCG----CACUUUCUAACUCGGUGCACUUAAAAUA-CAUGGCUGUUAUAUGUUU
((((((((((((.....)))((......))....)))))))))((((((.((((----((((.........))))).(........-...))))))))))..... ( -17.40)
>consensus
AAAAUGUACCACAAAAUGUGCGGCAAAACAAUAAGUAUAUUUUUGUAGCUAGCG____CACUUUCUAACUUGGUGCAUUUCAAAUAACAUGGCUGU_____AUGU
.((((((((((((((((((((.............))))).))))))((..((........))..)).....)))))))))......................... (-15.24 = -14.62 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:16 2006