Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,801,113 – 2,801,228 |
Length | 115 |
Max. P | 0.585852 |
Location | 2,801,113 – 2,801,228 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 66.69 |
Mean single sequence MFE | -18.69 |
Consensus MFE | -9.33 |
Energy contribution | -9.88 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.18 |
Mean z-score | -1.40 |
Structure conservation index | 0.50 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2801113 115 + 20766785 CCCUCCAGCAGAUUA-----GUUCUUCGGUUCCCUUUUCACCCAGGCGAUAUGAGAUGCUCCAAGUUCGUAAUCAGCUCACAUGCUGAUCGCCAAUAAUCAAUUUCCAGGUCCAGCUCUU ......(((.((..(-----(..(....)....))..)).....(((((((((((.(......).)))))).(((((......)))))))))).....................)))... ( -23.40) >DroSec_CAF1 7981 111 + 1 -UUUUAAGCAGAUUA-----GUUAUUCGCUUCCCUUCUCACCCAGACGAUAUGGGAUGCUCCAAGUUCGUAAUCAGCUCACAUGCUGAUCGCCAAUAAUCAAUUUAC---UCCAGCUCUU -.....((.(((((.-----((((((.((.((((.((((.....)).))...)))).)).........(..((((((......))))))..).)))))).))))).)---)......... ( -24.10) >DroSim_CAF1 8029 95 + 1 -UUU-AA--------------------GCUUCCCUUCUCACCCAGACUAUAUUGGAUGCUCCAAGUUCGUAAUCAGCUCACAUGCUGAUCGCCAAUAAUCAAUUUAC---UCCAGCUCUU -...-.(--------------------(((.....................((((.....))))(((.(..((((((......))))))..).)))...........---...))))... ( -17.10) >DroEre_CAF1 8230 89 + 1 ----------------------------UUGCCCUUCUCACCCAGUCGAUAUGGCAUGCUUAAAGCUCGUAAUCAGCUCACAUGCUGAUCGCCAAUAAUCAAUUUAC---UCCAACGUUU ----------------------------...................(((.((((..((.....)).....((((((......)))))).))))...))).......---.......... ( -15.90) >DroYak_CAF1 7953 88 + 1 ----------------------------CUGC-UUUUUCACCCAGUCGAUAUGGGCUGUUUCCAGUUGUUAAUCAGCACACAUGCUGAUCGCCGAAAAUCAAUUUAC---UCCAGCUCUU ----------------------------....-...................((((((.....(((((...(((((((....)))))))..........)))))...---..)))))).. ( -16.12) >DroAna_CAF1 7819 109 + 1 CUCUCCAGCCACUUCACUCCGUCAUCAGUUUCCCUUCUUGGCU--------UAGCGCGACUCGAGUUCAUAAUCAGCUCACAUGCUGAUCUCUCAUUUUCAAUUAAC---UUAAACGUUU ...............((((.(((....(((..((.....))..--------.)))..)))..)))).....((((((......))))))..................---.......... ( -15.50) >consensus _U_U__A____________________GCUUCCCUUCUCACCCAGACGAUAUGGGAUGCUCCAAGUUCGUAAUCAGCUCACAUGCUGAUCGCCAAUAAUCAAUUUAC___UCCAGCUCUU ........................................((((.......)))).............(..((((((......))))))..)............................ ( -9.33 = -9.88 + 0.56)
Location | 2,801,113 – 2,801,228 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.69 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -12.43 |
Energy contribution | -11.74 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.48 |
Mean z-score | -1.43 |
Structure conservation index | 0.48 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2801113 115 - 20766785 AAGAGCUGGACCUGGAAAUUGAUUAUUGGCGAUCAGCAUGUGAGCUGAUUACGAACUUGGAGCAUCUCAUAUCGCCUGGGUGAAAAGGGAACCGAAGAAC-----UAAUCUGCUGGAGGG ..........(((.......((((((((..(((((((......))))))).)))..((((....((((...((((....))))...)))).)))).....-----))))).......))) ( -25.14) >DroSec_CAF1 7981 111 - 1 AAGAGCUGGA---GUAAAUUGAUUAUUGGCGAUCAGCAUGUGAGCUGAUUACGAACUUGGAGCAUCCCAUAUCGUCUGGGUGAGAAGGGAAGCGAAUAAC-----UAAUCUGCUUAAAA- ........((---(((.((((.(((((.(((((((((......))))))).....(((....((.((((.......))))))....)))..)).))))).-----)))).)))))....- ( -29.00) >DroSim_CAF1 8029 95 - 1 AAGAGCUGGA---GUAAAUUGAUUAUUGGCGAUCAGCAUGUGAGCUGAUUACGAACUUGGAGCAUCCAAUAUAGUCUGGGUGAGAAGGGAAGC--------------------UU-AAA- ..(((((...---............(((..(((((((......))))))).))).(((....((((((........))))))....))).)))--------------------))-...- ( -24.40) >DroEre_CAF1 8230 89 - 1 AAACGUUGGA---GUAAAUUGAUUAUUGGCGAUCAGCAUGUGAGCUGAUUACGAGCUUUAAGCAUGCCAUAUCGACUGGGUGAGAAGGGCAA---------------------------- ....(((...---.....(((((...(((((((((((......)))))))....((.....))..)))).)))))((........)))))..---------------------------- ( -20.80) >DroYak_CAF1 7953 88 - 1 AAGAGCUGGA---GUAAAUUGAUUUUCGGCGAUCAGCAUGUGUGCUGAUUAACAACUGGAAACAGCCCAUAUCGACUGGGUGAAAAA-GCAG---------------------------- ....((((((---(.........)))))))((((((((....)))))))).....(((....)))((((.......)))).......-....---------------------------- ( -25.70) >DroAna_CAF1 7819 109 - 1 AAACGUUUAA---GUUAAUUGAAAAUGAGAGAUCAGCAUGUGAGCUGAUUAUGAACUCGAGUCGCGCUA--------AGCCAAGAAGGGAAACUGAUGACGGAGUGAAGUGGCUGGAGAG .(((......---)))..............(((((((......))))))).....(((.((((((..((--------..((.....((....))......))..))..)))))).))).. ( -29.60) >consensus AAGAGCUGGA___GUAAAUUGAUUAUUGGCGAUCAGCAUGUGAGCUGAUUACGAACUUGAAGCAUCCCAUAUCGACUGGGUGAGAAGGGAAGC____________________U__A_A_ ....(((((................)))))(((((((......))))))).....(((....((.((((.......))))))....)))............................... (-12.43 = -11.74 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:51 2006