Locus 5208

Sequence ID 2R_DroMel_CAF1
Location 16,946,519 – 16,946,616
Length 97
Max. P 0.889963
window8321

overview

Window 1

Location 16,946,519 – 16,946,616
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 95.38
Mean single sequence MFE -21.46
Consensus MFE -18.42
Energy contribution -18.46
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.86
SVM decision value 0.96
SVM RNA-class probability 0.889963
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16946519 97 + 20766785
AACCCUUUU-UUCCAGCUGCCAGGGAAAACUUUGCAAUGCAAAGCCAAGUUUCCAGCGACCAACAUCAAAAGGUGAAACACAAACAGCUGCAAAGCGG
..((((((.-...((((((....(((((.((((((...)))))).....))))).........((((....)))).........)))))).)))).)) ( -23.10)
>DroSec_CAF1 43403 96 + 1
AACCCUUUU-UU-CAGCUGCCAGGGAAAACUUUGCAAUGCAAAACCAAGUUUCAAGCGACCAACAUCAAAAGGUGAAACACAAACAGCUGCAAAGCGG
...((.(((-(.-((((((...((......(((((...))))).))..(((((.....(((..........)))))))).....)))))).)))).)) ( -18.70)
>DroSim_CAF1 46449 97 + 1
AACCCUUUU-UUCCAGCUGCCAGGGAAAACUUUGCAAUGCAAAGCCAAGUUUCAAGCGAGCAACAUCAAAAGGUGAAACACAAACAGCUGCAAAGCGG
..((((((.-...((((((....((....((((((...))))))))..((((((...((......))......)))))).....)))))).)))).)) ( -21.40)
>DroEre_CAF1 44763 97 + 1
AACCCUUUU-UACCAGCUGCCAGGGAAAACUUUGCAAUGCAAAGCUAAGUUUCAAGCGACCAACAUCAAAAGGUGAAACACAAACAGCUGCAAAGCGG
..((((((.-...((((((...((......(((((...)))))(((........)))..))..((((....)))).........)))))).)))).)) ( -20.50)
>DroYak_CAF1 45949 98 + 1
AACCCUUUUUUCCCAGCUGCCAGAGAAAACUUUGCAAUGCAAAGCUAAGUUUCAAGCGUCCAACAUCAAAAGGUGAAACACAAGCAGCUGCAAAGCGG
..((((((.....(((((((..((((...((((((...)))))).....))))..........((((....))))........))))))).)))).)) ( -23.60)
>consensus
AACCCUUUU_UUCCAGCUGCCAGGGAAAACUUUGCAAUGCAAAGCCAAGUUUCAAGCGACCAACAUCAAAAGGUGAAACACAAACAGCUGCAAAGCGG
..((((((.....((((((...((((...((((((...)))))).....))))..........((((....)))).........)))))).)))).)) (-18.42 = -18.46 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:09 2006