Locus 5207

Sequence ID 2R_DroMel_CAF1
Location 16,935,571 – 16,935,664
Length 93
Max. P 0.500000
window8320

overview

Window 0

Location 16,935,571 – 16,935,664
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 89.00
Mean single sequence MFE -14.59
Consensus MFE -14.15
Energy contribution -14.32
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -0.93
Structure conservation index 0.97
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16935571 93 - 20766785
AA-AAACACGCAUAAG-------------UAU-------UACGUACAACUAAACCAAGUCAAAAGGUGAGCAGCAAAGCGUUAAAAGAAAAUCGUUUUAGUUGCAAGUGAGAGC
..-...(((.......-------------..(-------(((.(...(((......)))....).))))(((((((((((............)))))).)))))..)))..... ( -15.50)
>DroSec_CAF1 33096 93 - 1
AA-AAACACGCAUAAG-------------UAU-------UACGUACAACUAAACCAAGUCAAAAGGUGAGCAGCAAAGCGUUAAAAGAAAAUCGUUUUAGUUGCAAGUGGGAGC
..-...(((.......-------------..(-------(((.(...(((......)))....).))))(((((((((((............)))))).)))))..)))..... ( -15.70)
>DroSim_CAF1 33438 93 - 1
AA-AAACACGCAUAAG-------------UAU-------UACGUACAACUAAACCAAGUCAAAAGGUGAGCAGCAAAGCGUUAAAAGAAAAUCGUUUUAGUUGCAAGUGAGAGC
..-...(((.......-------------..(-------(((.(...(((......)))....).))))(((((((((((............)))))).)))))..)))..... ( -15.50)
>DroEre_CAF1 33567 94 - 1
AAAAAACACGCAUAAG-------------UAU-------UACGUACAACUAAACCAAGUCAAAAGGUGAGCAGCAAAGCGUUAAAAGAAAAUCGUUUUAGUUGCAAGUGAGAGC
......(((.......-------------..(-------(((.(...(((......)))....).))))(((((((((((............)))))).)))))..)))..... ( -15.50)
>DroYak_CAF1 34760 93 - 1
AA-AAACACGCAUAAG-------------UAU-------UACGUACAACUAAACCAAGUCAAAAGGUGAGCAGCAAAGCGUUAAAAGAAAAUCGUUUUAGUUGCAAGUGAGAGC
..-...(((.......-------------..(-------(((.(...(((......)))....).))))(((((((((((............)))))).)))))..)))..... ( -15.50)
>DroAna_CAF1 34946 113 - 1
UA-AAACACGCACAUACACACACUCUAAAAAUAAAUCCACAACUACAACUAAACCAAGUCAAAAGGUGAGCAGCAAAGCGUUAAAAGAAAAUCGUUUUAGUUUCAAGUGAAAAC
..-.................((((.............(((.......(((......)))......))).(.(((((((((............)))))).))).).))))..... (  -9.82)
>consensus
AA_AAACACGCAUAAG_____________UAU_______UACGUACAACUAAACCAAGUCAAAAGGUGAGCAGCAAAGCGUUAAAAGAAAAUCGUUUUAGUUGCAAGUGAGAGC
......(((...........................................(((.........)))..(((((((((((............)))))).)))))..)))..... (-14.15 = -14.32 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:09 2006