Locus 5206

Sequence ID 2R_DroMel_CAF1
Location 16,933,809 – 16,933,904
Length 95
Max. P 0.626259
window8319

overview

Window 9

Location 16,933,809 – 16,933,904
Length 95
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 82.86
Mean single sequence MFE -37.20
Consensus MFE -22.60
Energy contribution -23.80
Covariance contribution 1.20
Combinations/Pair 1.12
Mean z-score -1.96
Structure conservation index 0.61
SVM decision value 0.19
SVM RNA-class probability 0.626259
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16933809 95 - 20766785
AAAUAUUUCAGGUAG--------CCAGGUAGCGAGGUAGCCGGGU---UGGCAGUCAGCAGCUUGUCAUAACCAGCCUUGGCACUCGAGUUG--GUGGUGCCAGGCUG
..........(.(((--------((.(((.((...)).))).)))---)).)......(((((((.(((.((((((.(((.....)))))))--)).))).))))))) ( -32.10)
>DroSec_CAF1 31349 97 - 1
AAAUAUUUCAGGUAG--------CCAGGUAGCCGGGUAGCUGGGC---UGGCAGUCAGCAGCUUGUCAUAACCAGUCUUGGCACUCGAGUUGCCGGGGUGCCAGGCUG
..........((((.--------((.(((((((((((.((..(((---(((..(.(((....))).)....)))).))..))))))).)))))).)).))))...... ( -39.60)
>DroSim_CAF1 31692 97 - 1
AAAUAUUUCAGGUAG--------CCAGGUAGCCGGGUAGCUGGGC---UGGCAGUCAGCAGCUUGUCAUAACCAGUCUUGGCACUCGAGUUGCCGGGGUGCCAGGCUG
..........((((.--------((.(((((((((((.((..(((---(((..(.(((....))).)....)))).))..))))))).)))))).)).))))...... ( -39.60)
>DroEre_CAF1 31793 97 - 1
AAAUAUUUCAGGUAGAAAGGUAACCAGGUAGCCAGGUAGCCAGGU---UGGCAGCCAGCAGCUUGUCAUAACCAGCCUUGGCACUCCAGUUGCCAGGGU--------G
.....((((.....))))(((...(((((.((..(((.(((....---.))).))).)).))))).....))).((((((((((....).)))))))))--------. ( -33.60)
>DroYak_CAF1 32944 96 - 1
AAAUAUUUCAGGCAGACAGG----CAGGUAGCCUGGUAGCCAGGUUGUUGGCAGCCAGCAGCUUGUCAUAACCAGCCUUGGCACUCGAGUUGCCAGGGU--------G
..........(((...((((----(.....)))))...))).((((((.((((((.....)).)))))))))).((((((((((....).)))))))))--------. ( -41.10)
>consensus
AAAUAUUUCAGGUAG________CCAGGUAGCCAGGUAGCCGGGU___UGGCAGUCAGCAGCUUGUCAUAACCAGCCUUGGCACUCGAGUUGCCGGGGUGCCAGGCUG
..........................((((.((.((((((..(((...(((((((.....)).)))))..))).((....))......)))))).)).))))...... (-22.60 = -23.80 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:08 2006