Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,932,071 – 16,932,166 |
Length | 95 |
Max. P | 0.990227 |
Location | 16,932,071 – 16,932,166 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 93.64 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -20.49 |
Energy contribution | -20.35 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.92 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16932071 95 - 20766785 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCU---A ....(((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).....((.....-))..---. ( -21.40) >DroSec_CAF1 29584 97 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCUCU-A (((((((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).....((.....-))))))-. ( -25.10) >DroSim_CAF1 29636 97 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCUGU-A ....(((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).((((((.....-)).)))-) ( -22.40) >DroEre_CAF1 30060 95 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU-GGCU---G ....(((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))).....((.....-))..---. ( -21.40) >DroYak_CAF1 30416 96 - 1 AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUUCGGCU---G .((((((((.(.((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).).))))..........))))....---. ( -21.30) >DroAna_CAF1 31499 99 - 1 AGAGGGCCACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGUUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUAUUAUGUAUGUCUGUUGGCACUUG .(((.....)))((((((((((((((.((..(((((.(((....)))))))).)).)))))))))))))).............((((....)))).... ( -21.40) >consensus AGAGGGCAACUCAUUAAGUAUUAAGUUUGUUGUUUAUCGCUGGGGCGUAAAUUUACACUUGAUAUUUAAUUAAUUGUUAUAUACCUACUU_GGCU___A .(((.....)))((((((((((((((.((..(((((.(((....)))))))).)).))))))))))))))............................. (-20.49 = -20.35 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:06 2006