Locus 5204

Sequence ID 2R_DroMel_CAF1
Location 16,927,893 – 16,927,986
Length 93
Max. P 0.841505
window8317

overview

Window 7

Location 16,927,893 – 16,927,986
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.19
Mean single sequence MFE -38.20
Consensus MFE -16.23
Energy contribution -16.23
Covariance contribution 0.00
Combinations/Pair 1.22
Mean z-score -2.12
Structure conservation index 0.42
SVM decision value 0.75
SVM RNA-class probability 0.841505
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16927893 93 + 20766785
UGCCGGUACGCCC--UUUUUUUCG-------AGUGCCAUG---C--ACUCGGCGGCACGCCCACAGCGGAUAAUAUGCGUCCAGCUUAUUAGUGGAUGC------AAUGG---CGU----
.((((...(((..--........(-------(((((...)---)--))))((((...))))....))).......((((((((.((....)))))))))------).)))---)..---- ( -35.20)
>DroSec_CAF1 25447 99 + 1
UGCCGGGCCGCCC--UUU-UUCCG-------AGUGCCAUGCAGC--ACUCGGCGGCACGCCCACAGCGGAUAACAUGCGUCCAGCUUAUUAGUGGAUGC------AAUGG---CGUCCAA
.((.((((.(((.--...-..(((-------(((((......))--)))))).)))..))))...))((((..((((((((((.((....)))))))))------.))).---.)))).. ( -45.90)
>DroSim_CAF1 25520 99 + 1
UGCCGGGCCGCCC--UUU-UUCCG-------AGUGCCAUGCUGC--ACUCGGCGGCACGCCCACAGCGGAUAACAUGCGUCCAGCUUAUUAGUGGAUGC------AAUGG---CGUACAA
.(((((((.(((.--...-..(((-------(((((......))--)))))).)))..)))).............((((((((.((....)))))))))------)..))---)...... ( -43.00)
>DroEre_CAF1 25865 88 + 1
UGCCGGCCCGCC---UUC-UUUCG-------AGUGCCAUG-----------GUGACACGCCCACCGCGGAUAACAUGCGUCCUGCUUAUUAGUGGGUGC-------AUGG---CGUCCAA
.((.((((((..---...-...))-------.).)))..(-----------(((.......))))))((((..((((((.((..((....))..)))))-------))).---.)))).. ( -34.30)
>DroYak_CAF1 26237 101 + 1
UGCUGGCCCACCCCUUUU-UUUCG-------AGUGCCAUG-----------GGUGCAUGCCCACAGCGGAUAACAUGCGUCCUGCUUAUUAGUGGACGCUAUAGCAAUGGCGGUGUCCAA
...(((..((((.(((..-....)-------)).((((((-----------(((....))))...(((.....)..((((((.(((....)))))))))....)).))))))))).))). ( -33.80)
>DroAna_CAF1 27297 107 + 1
UGUGGGGGUGUUU--AUU-CUCCGGGUUGAGAGUGUGUUAGUGUAGACU-GGAGCCACGCCCACAGCGGAUAACAUGCGUCCUGCUUAUUAGUGGAUGC------AAUAG---CGCUCCA
((((((.(((...--(((-(((......))))))((.(((((....)))-)).))))).))))))(((..((...(((((((.(((....)))))))))------).)).---))).... ( -37.00)
>consensus
UGCCGGGCCGCCC__UUU_UUCCG_______AGUGCCAUG___C__ACU_GGCGGCACGCCCACAGCGGAUAACAUGCGUCCAGCUUAUUAGUGGAUGC______AAUGG___CGUCCAA
....................((((........(((((................)))))........))))......((((((.(((....)))))))))..................... (-16.23 = -16.23 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:05 2006