Locus 5202

Sequence ID 2R_DroMel_CAF1
Location 16,921,390 – 16,921,480
Length 90
Max. P 0.779108
window8314

overview

Window 4

Location 16,921,390 – 16,921,480
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 80.79
Mean single sequence MFE -30.82
Consensus MFE -20.06
Energy contribution -21.78
Covariance contribution 1.73
Combinations/Pair 1.30
Mean z-score -1.92
Structure conservation index 0.65
SVM decision value 0.55
SVM RNA-class probability 0.779108
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16921390 90 + 20766785
CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCAGAGGCUGUCAUUCAUUCGAGUUGUGGCUGUAUUGCGGUUGAGGCU---GCUCUUCU
..(((...(((((((((((.((((....)))).)))))))))))...........(((..((((((.....))))))..)))---)))..... ( -30.90)
>DroSec_CAF1 18943 90 + 1
CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCAGGGGCUGUCAUUCAUUCGGGUUGUGGCUGUAUUGCGGCUGGAGCU---GCUCUUCU
..(((...(((((((((((.((((....)))).)))))))))))...........((((.((((((.....)))))).))))---)))..... ( -34.00)
>DroSim_CAF1 19004 90 + 1
CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCAGAGGCUGUCAUUCAUUCGGGUUGUGGCUGUAUUGCGGCUGGAGCU---GCUCUUCU
..(((...(((((((((((.((((....)))).)))))))))))...........((((.((((((.....)))))).))))---)))..... ( -34.90)
>DroEre_CAF1 19403 89 + 1
CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCAGAGGCUGUCAUUCAUUCGGGUUGAAGUUUUCUUGCGG-UGAGGCU---GCUCUUCU
..(((...(((((((((((.((((....)))).)))))))))))...((((((((((..........)))).))-)))))))---........ ( -28.30)
>DroYak_CAF1 19665 92 + 1
CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCAAAGGCUGUCAUUCAUUCGGCCUGGGGUUUUGUUGCGG-UGAGGCUGCUGCUCUUCU
..(((...(((((((((((.((((....)))).)))))))))))...........))).((((....((.((((-.....)))).)).)))). ( -32.34)
>DroAna_CAF1 20678 73 + 1
AUGGCAUUAAGUUUUUGGCGGGAUGUCAAGCCAGAAUGAUGGUGCCUUACU---G------AGCUGAGUUGCGGCUGAAA-----------CU
..(((((((...(((((((..(....)..)))))))...)))))))....(---.------(((((.....))))).)..-----------.. ( -24.50)
>consensus
CUGGCAUUCAGUUUUUGGCGGGUUGUCAAGCCAGCCAGAGGCUGUCAUUCAUUCGGGUUGUGGCUGUAUUGCGGCUGAAGCU___GCUCUUCU
..(((...(((((((((((.((((....)))).)))))))))))...........((((..(((((.....)))))..))))...)))..... (-20.06 = -21.78 +   1.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:03 2006