Locus 5200

Sequence ID 2R_DroMel_CAF1
Location 16,917,463 – 16,917,559
Length 96
Max. P 0.661609
window8311

overview

Window 1

Location 16,917,463 – 16,917,559
Length 96
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 79.25
Mean single sequence MFE -28.03
Consensus MFE -21.46
Energy contribution -20.97
Covariance contribution -0.49
Combinations/Pair 1.35
Mean z-score -1.14
Structure conservation index 0.77
SVM decision value 0.27
SVM RNA-class probability 0.661609
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16917463 96 + 20766785
ACCCCCUCAUUUCUCUCAGUGCC---CU----------UGUGUGUGCUCAGUG-GUGCUAAGCUGCUGGCUGCGUGCAUCGCUUGCAGCUUAUUACAUACGACCAAACAC------
..................((...---.(----------((((((((..(((..-((.....))..)))((((((.((...)).))))))....)))))))))....))..------ ( -27.60)
>DroSec_CAF1 15118 97 + 1
AGCCCCUCAUUUCUCUCAGUGCC---UUG---------UGUGUGUGCUCAGUG-GUGCUAAGCUGCUGGCUGCGUGCAUCGCUUGCAGCUUAUUACAUACGACCAAACAC------
..................((...---(((---------((((((.((((((((-((((..(((.....)))....))))))).)).)))....)))))))))....))..------ ( -27.70)
>DroSim_CAF1 15123 97 + 1
AGCCCCUUAUUUCUCUCAGUGCC---UUG---------UGUGUGUGCUCAGUG-GUGCUAAGCUGCUGGCUGCGUGCAUCGCUUGCAGCUUAUUACAUACGACCAAACAC------
..................((...---(((---------((((((.((((((((-((((..(((.....)))....))))))).)).)))....)))))))))....))..------ ( -27.70)
>DroEre_CAF1 15459 96 + 1
AGCCCCUCAUUUCUUUCAGUGCU---UU----------UGUGUUUGCUCAGUG-GUGCUAAGCUGCUGGCUGCGUGCAUUGCAUGCAGCUUAUUACAUACGACCGAACAC------
.......................---..----------.(((((((.((((..-((.....))..))((((((((((...))))))))))..........)).)))))))------ ( -29.00)
>DroYak_CAF1 15798 96 + 1
AGUCCCCCAUUUCUUUCAGUGCU---UU----------UGUGUUUGCUCAGUG-GUGCUAAGCUGCUAGCUGCGUGCAUGGCAUCCAGCUUAUUACAUACGACCAAACAC------
.......................---..----------.(((((((.((.(((-(((.(((((((...(((........)))...))))))).))).))))).)))))))------ ( -23.80)
>DroAna_CAF1 16881 116 + 1
UCCUUAUUAUUUUUCUGACUGCACCAUUGUGUAUUCCUGGUGUGUGCUCAGUGGGCACUGAGCUGUGGGUUGCGUGUUCUGCAAACGGCUUAUUACACACAGGCAAACAACCCGAC
...................(((((....)))))..((((.((((((((((((....))))))).((((((((..((.....))..)))))))).)))))))))............. ( -32.40)
>consensus
AGCCCCUCAUUUCUCUCAGUGCC___UU__________UGUGUGUGCUCAGUG_GUGCUAAGCUGCUGGCUGCGUGCAUCGCAUGCAGCUUAUUACAUACGACCAAACAC______
.......................................((((.((.((.(((.(((.((((((((..((((....))..))..)))))))).))).))))).)).))))...... (-21.46 = -20.97 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:00 2006