Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,917,173 – 16,917,271 |
Length | 98 |
Max. P | 0.766574 |
Location | 16,917,173 – 16,917,271 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.18 |
Mean single sequence MFE | -22.81 |
Consensus MFE | -20.72 |
Energy contribution | -21.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.34 |
Structure conservation index | 0.91 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16917173 98 + 20766785 UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUACC------------GUUCGCUCAGGCUUUGUCCGU .((((............((((((((...))))))))............((((...((((.....))))..))))...------------.........))))........ ( -23.20) >DroSim_CAF1 14836 98 + 1 UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCC------------GUUCGCUCAGGCUUUGUCCGU .((((............((((((((...))))))))............((((...((((.....))))..))))...------------.........))))........ ( -22.60) >DroEre_CAF1 15184 98 + 1 UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCC------------UCUCGCUCAGGCUUUGUCCAU .((((............((((((((...))))))))............((((...((((.....))))..))))...------------.........))))........ ( -22.60) >DroYak_CAF1 15507 110 + 1 UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCCUCUGCCUCCCCCUCUCGCUCAGGCUUUGUCCAU .((((............((((((((...))))))))............((((...((((.....))))..))))........................))))........ ( -22.60) >DroAna_CAF1 16625 98 + 1 UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGCUUUGCUUCC------------UCACUUGCCGGCUUUGUCCAU .((((............((((((((...)))))))).............)).))...((((((((.((.........------------......)).))).)))))... ( -23.07) >consensus UGGCCAUCCACAAAAACACGUGCGCCAUGUGCACGUUAUUAAUCAACAAGGACCUACGACAAGCUCGUUUUCCUCCC____________UCUCGCUCAGGCUUUGUCCAU .((((............((((((((...))))))))............((((...((((.....))))..))))........................))))........ (-20.72 = -21.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:59 2006