Locus 5198

Sequence ID 2R_DroMel_CAF1
Location 16,915,456 – 16,915,549
Length 93
Max. P 0.542419
window8309

overview

Window 9

Location 16,915,456 – 16,915,549
Length 93
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 85.42
Mean single sequence MFE -18.34
Consensus MFE -13.48
Energy contribution -14.01
Covariance contribution 0.53
Combinations/Pair 1.07
Mean z-score -2.23
Structure conservation index 0.74
SVM decision value 0.02
SVM RNA-class probability 0.542419
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16915456 93 + 20766785
AAUGCGCAUAGCGUUUGAGACAAAACAGAGA-AACAAAAUGGCGACAACGCCCCCAUCAUCAUCAUCAUCGUCGCCAUUUCCAACCCCAACCCC
...((.....))((((......)))).....-....((((((((((........................)))))))))).............. ( -16.36)
>DroSec_CAF1 13195 86 + 1
AAUGCGCAUAGAGUUUGAGACAA-ACAGAGA-AACAAAAUGGCGACAACGCCCCCAUCAUC---AUCAUCGUCGCCAUUUCCAACCCCAGC---
.....((.....(((((...)))-)).....-....((((((((((...............---......)))))))))).........))--- ( -16.10)
>DroSim_CAF1 13175 86 + 1
AAUGCGCAUAGCGUUUGAGACAA-ACAGAGA-AACAAAAUGGCGACAACGCCCCCAUCAUC---AUCAUCGUCGCCAUUUGCAACCCCACC---
..(((.......(((((...)))-)).....-....((((((((((...............---......)))))))))))))........--- ( -19.00)
>DroEre_CAF1 13439 81 + 1
AAUGCGCAUAGCGUUUGAGACAA-ACAGAGA-AACAAAAUGGCGACAACGCCCCCAUCA------UCAUCGUCGCCAUUUUCCGCCCUA-----
...(((......(((((...)))-)).....-...(((((((((((.............------.....))))))))))).)))....----- ( -18.97)
>DroYak_CAF1 13687 80 + 1
AAUGCGCAUAGCGUUUGAAACAA-ACAGAGA-AACAAAAUGGCGACAACGCCCCCAUCA------UCAUCGUCGCCAUUUUCC-CCCUA-----
...((.....))(((((...)))-)).....-...(((((((((((.............------.....)))))))))))..-.....----- ( -17.97)
>DroPer_CAF1 16837 90 + 1
AAUGCGCAAAACAUCGGAAACAA-ACAGAGAAAACAAAAUGGCGACAACGCCCCCAUCAUC---AUCGUCGUCGCCAUUGCCAUUGCCACAGCC
((((.((........(....)..-.............(((((((((.(((...........---..))).)))))))))))))))......... ( -21.62)
>consensus
AAUGCGCAUAGCGUUUGAGACAA_ACAGAGA_AACAAAAUGGCGACAACGCCCCCAUCAUC___AUCAUCGUCGCCAUUUCCAACCCCA_C___
(((((.....))))).....................((((((((((........................)))))))))).............. (-13.48 = -14.01 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:58 2006