Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,904,004 – 16,904,110 |
Length | 106 |
Max. P | 0.597301 |
Location | 16,904,004 – 16,904,110 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -32.85 |
Consensus MFE | -15.47 |
Energy contribution | -16.92 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.16 |
Mean z-score | -2.35 |
Structure conservation index | 0.47 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16904004 106 - 20766785 UGGUUGGCGCGGGUGACAAACAGUGCUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCGU .(((.(((((((((........((((((((((.....)))))).....))))...(((..(((....-----.....))).)))..........))))...)))))))).. ( -34.30) >DroSec_CAF1 1820 106 - 1 UGGUUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCGA .(((.(((((((((........(((.((((((.....))))))....))).....(((..(((....-----.....))).)))..........))))...)))))))).. ( -32.30) >DroSim_CAF1 1867 103 - 1 UGGUUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCGAC--- ((((..((((((....).....(((.((((((.....))))))....))).))).))..))))((((-----.....((....))(.....)........))))....--- ( -30.30) >DroEre_CAF1 1912 105 - 1 UGGAUGGCGCGGGUGACAAACAGGACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACAGG-----AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCG- .((.((((((((....).....((..((((((.....))))))............(((..(((..(.-----...).))).)))............))..))))))))).- ( -34.60) >DroYak_CAF1 1891 105 - 1 UGGAUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUCCCAUAAUUGCGCGCAGCUGACCACACG-----AAACAUGGAAGCAGAAAAUCAAACGCAACGUCCUAACG- .(((((..(((..(((....((((..(((((((.((......)).))))).))..)))).(((....-----.....)))..........)))..)))..))))).....- ( -26.80) >DroPer_CAF1 6338 96 - 1 UGGG--AGGCGGACCACACACAGCAG-GACCACAAUUCGGGCAUAAUUGUCCACAGAUGGUCACAUGUCUAGAGACAUGUAG--AGACCAUUGAGUCCUGC---------- (((.--.......)))......((((-((((.......(((((....)))))...((((((((((((((....)))))))..--.)))))))).)))))))---------- ( -38.80) >consensus UGGUUGGCGCGGGUGACAAACAGCACUGGCAAUAAUUUUGCCAUAAUUGCGCGCAGCUGACCACACG_____AAACAUGGAAGCAGAAAAUCAAACCCAACGUGCCACCG_ ....((((((((....)...((((...(((((.....))))).....((....)))))).........................................))))))).... (-15.47 = -16.92 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:55 2006