Locus 5195

Sequence ID 2R_DroMel_CAF1
Location 16,899,110 – 16,899,202
Length 92
Max. P 0.840771
window8305

overview

Window 5

Location 16,899,110 – 16,899,202
Length 92
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 87.42
Mean single sequence MFE -31.67
Consensus MFE -27.89
Energy contribution -28.17
Covariance contribution 0.28
Combinations/Pair 1.13
Mean z-score -1.80
Structure conservation index 0.88
SVM decision value 0.75
SVM RNA-class probability 0.840771
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16899110 92 + 20766785
UGCAGCUGAAGGAGUUCCCCAAAUGGGACGACUCCUGGCAGUGCAUCAUCAAGGCUUUGCAAUACACGGCUGCACAGUGAGUUUGACUUAAA-------
((((((((.(((((((.(((....)))..))))))).((((.((.........)).))))......))))))))...((((.....))))..------- ( -33.60)
>DroGri_CAF1 21096 97 + 1
UGCGCCUCAAGGAGUUCCCCAAGUGGGACAACUCCUGGCAGUGCAUUGUCAGGGCGUUGCAGUACACGGCUGCCCAGUAAGUGGAU--UACCCAGAUUG
.((((((..(((((((.(((....)))..)))))))(((((....))))).)))))).(((((.....))))).((((...(((..--...))).)))) ( -33.80)
>DroSec_CAF1 1469 92 + 1
UGCAACUGAAGGAGUUCCCCAAGUGGGACGAUUCCUGGCAGUGCAUCAUCAAGGCUUUGCAAUACACGGCUGCACAGUGAGUUUGGCUUCAA-------
((((.(((.(((((((.(((....)))..)))))))..)))))))((((...((((.((.....)).)))).....))))............------- ( -26.40)
>DroSim_CAF1 1472 92 + 1
UGCAGCUGAAGGAGUUCCCCAAGUGGGACGACUCCUGGCAGUGCAUCAUUAAGGCCUUGCAAUACACGGCUGCACAGUAAGUUUAGCUUAAA-------
((((((((.(((((((.(((....)))..))))))).((((.((.........)).))))......))))))))...((((.....))))..------- ( -33.80)
>DroEre_CAF1 1483 92 + 1
UGCAGCUGAAGGAGUUCCCCAAGUGGGACGACUCCUGGCAGUGCAUCAUCAAGGCUUUGCAAUACACGGCUGCACAGUGAGUUUGUCUUAAA-------
((((((((.(((((((.(((....)))..))))))).((((.((.........)).))))......))))))))...((((.....))))..------- ( -33.20)
>DroYak_CAF1 1488 92 + 1
UGCAGCUGAAGGAGUUCCCCAAGUGGGACGACUCCUGGCAGUGCAUCAUCAAGGCUUUGCAGUACACGGCAGCACAGUGAGUUUGGCUUAAA-------
((((.(((.(((((((.(((....)))..)))))))..)))))))......(((((..((....(((.........))).))..)))))...------- ( -29.20)
>consensus
UGCAGCUGAAGGAGUUCCCCAAGUGGGACGACUCCUGGCAGUGCAUCAUCAAGGCUUUGCAAUACACGGCUGCACAGUGAGUUUGGCUUAAA_______
.(((((((.(((((((.(((....)))..))))))).((((.((.........)).))))......))))))).......................... (-27.89 = -28.17 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:54 2006