| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,869,719 – 16,869,809 |
| Length | 90 |
| Max. P | 0.704517 |
| Location | 16,869,719 – 16,869,809 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 83.11 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -20.49 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16869719 90 + 20766785 CGGCCGCUGCGGAAAGAGACGGUUAUACACCGUUGGCGCCUUU-CCAGUAAGGUGGCGCCAGUAUCGUAUCUUUU--UUUGCGACUUUUGCUU .(((.(.((((((((((((((((.....))))((((((((...-((.....)).)))))))).......))))))--)))))).)....))). ( -33.10) >DroSec_CAF1 20152 83 + 1 C-------GCGGAAAGAGACGGUUAUAUACCGUUGGCGCCUUC-UCAGUAAGGUGGCGCCAGUAUCGUAUCUUUU--UUUGCGGCUUUUGCUC (-------(((((((((((((((.....))))((((((((.((-(.....))).)))))))).......))))))--))))))((....)).. ( -35.30) >DroSim_CAF1 20258 83 + 1 C-------GCGGAAAGAGACGGUUAUAUACCGUUGGCGCCUUC-CCAGUAAGGUGGCGCCAGUAUCGUAUCUUUU--UUUGCGGCUUUUGCUU (-------(((((((((((((((.....))))((((((((..(-(......)).)))))))).......))))))--))))))((....)).. ( -35.90) >DroEre_CAF1 20440 91 + 1 CGGUCGCUACGGAAAGAGACGGAUAUACACCGAUGGCGCCUUCCCCAGUAAGGUGGCGCCAGUAUCGUAUCUUUU--UUUGCGGCUUUUGCUG .((((((...(((((((.(((.((((.......(((((((..((.......)).)))))))))))))).))))))--)..))))))....... ( -32.41) >DroYak_CAF1 20631 93 + 1 CCGUCGCUGCGGAAAGAGACGGACAUACACCGAUGGCGCCUUCCCCAGUAAGGUGGCGCCAGUAUCGUAUCUUUUUUUUUGCGGCUUUUGCUU .....(((((((((((((((((.......))).(((((((..((.......)).)))))))..........))))))))))))))........ ( -34.30) >DroAna_CAF1 23624 83 + 1 GGUCCGGACCGGAAAGAGACGGUGCUA--UUGAUGGCGCCUUC-CCAGUAAGGUGGCGCCAGUAUCGUAU-------UUGCCCGCUCUUGCUU (((....)))((.(((((.(((.((..--.((((((((((..(-(......)).)))))))...)))...-------..)))))))))).)). ( -32.00) >consensus CGG_CGCUGCGGAAAGAGACGGUUAUACACCGAUGGCGCCUUC_CCAGUAAGGUGGCGCCAGUAUCGUAUCUUUU__UUUGCGGCUUUUGCUU ..........((.(((((.(((.......))).(((((((....((.....)).)))))))...(((((..........)))))))))).)). (-20.49 = -20.30 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:52 2006