Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,800,331 – 2,800,441 |
Length | 110 |
Max. P | 0.840066 |
Location | 2,800,331 – 2,800,441 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -36.14 |
Consensus MFE | -28.15 |
Energy contribution | -27.79 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.18 |
Mean z-score | -1.92 |
Structure conservation index | 0.78 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2800331 110 + 20766785 UCAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACC-----ACUGUAGCUAUGACACUCUAACCCGCUGACUUACUGCCGCAACCCGGUGGGU----UUUUCGAUUUCAUU ...((((((.....)))))).(((((((((....))))).))))-----.........((((......(((((((((................))))))))----)........)))). ( -34.83) >DroSec_CAF1 7173 114 + 1 -CAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACCAUGCCACUGUAGCUAUGACACUCUAACCCGCUGACUUACUACCGCAACCCGAUGGGU----UUUUCGAUUUCAUU -.(((((((..(((((.((((((((((((((((.((.((....))))))....((((................)))).....)))))).))))))))))))----)..))))))).... ( -37.69) >DroSim_CAF1 7221 114 + 1 -CAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACCAUGACACCGUAGCUAUGACACUCUAACCCGCUGACUUACUACCGCAGCCCGAUGGGU----UUUUCGAUUUCAUU -.(((((((..(((((.((((((((((((((((....(((.......))))).((((................)))).....)))))).))))))))))))----)..))))))).... ( -36.09) >DroEre_CAF1 7458 99 + 1 GAAGAUCGAUGGUUUCGAUCGGGUUCGGUGGGGA-AGU---------------CAGCUAUGACACUGUAACCCGCUGACUUACUACCGCAACCCGAUGGGU----UUUUCGAUUUCAUU ((.((((((.....((.((((((((((((((..(-(((---------------((((................)))))))).)))))).)))))))).)).----...))))))))... ( -43.69) >DroYak_CAF1 7196 103 + 1 GACGAUCGAUGGUUUCGAUCGGAUUCGGUGGGGC-ACU---------------CAGCUAUGACACUGUAACCCGCUGACUUACUGCCGCAACUCGAUGGGUUUGUUUUUCGAUUUCAUU ..(((((((.....)))))))...((((((((..-...---------------(((........)))...))))))))................((((((.(((.....))).)))))) ( -28.40) >consensus _CAGAUCGAUGGAUUCGAUCGGGUUCGGUGGGGACACUGUAACC_____AC_GUAGCUAUGACACUCUAACCCGCUGACUUACUACCGCAACCCGAUGGGU____UUUUCGAUUUCAUU ..(((((((.....((.(((((((((((((((....)................((((................)))).....)))))).)))))))).))........))))))).... (-28.15 = -27.79 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:47 2006