| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,857,214 – 16,857,309 |
| Length | 95 |
| Max. P | 0.848149 |
| Location | 16,857,214 – 16,857,309 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 80.21 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -21.79 |
| Energy contribution | -22.27 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16857214 95 + 20766785 GGUUAGUGCCAUUACAUG-UUUUCCUGUUUGGGUGCCUACCAUUGUGGCCAUUCUGGCGGCAGGAUAAUAGCCUGGCACUUUUCCUAGAGCCAGGA (((..(..((...(((.(-....).)))...))..)..))).((((.(((.....))).))))........((((((.((......)).)))))). ( -34.80) >DroSec_CAF1 7652 95 + 1 GGUAAGUGCCAUAACAUG-UUUUCCUGCCUGGGUGUCUACCAUUGUGGCCAUUCUGGCGGCGGGAUAAUAUCCUGGUACUUUUCCGAGAGCCAGGA (((....)))......((-((.((((((((((.......))).....(((.....)))))))))).))))(((((((.(((....))).))))))) ( -36.40) >DroSim_CAF1 7650 96 + 1 GGUAAGUGCCAUAACAUGGUUUUCUUGCUUGGGUGUCUACCAUUGUGGCCAUUCUGGCGGCAGGAUAAUAUCCUGGUACUUUUCCGAGAGCCAGGA ((((((.(((((...)))))...))))))(((.......)))((((.(((.....))).)))).......(((((((.(((....))).))))))) ( -33.20) >DroEre_CAF1 7822 95 + 1 GGUUAGUGCCGCAACAUC-UUUUCCAGCUUGAGCGCCUACCAUUGUGGCCAUUCGGGCAGCAGGAUAAUAGCCUGGUACUCUGCCGAGAGCCAGGA (((..(((((((......-.......))..).))))..))).((((.(((.....))).))))........((((((.(((....))).)))))). ( -29.22) >DroYak_CAF1 7702 95 + 1 GGUAAGUGCCAUAACAUA-GUUGCCUGACUGAGCAUCUACCAUUGUGGCCAUUCGGGCGGCAGGAUAAUAGCCUGGUACUUUUCCGAGAGCCAGGA (((....)))........-(((((((((.((.((..(.......)..)))).)))))))))..........((((((.(((....))).)))))). ( -31.20) >DroAna_CAF1 11215 86 + 1 GGGAAG---------AGU-UUGACCAAAAAGGACACCUACCAUGGUGGCCAUUCGAGUGGCUGGAUAAUAGCCUGGCACUUUUCCCAAGGCCAGAA ((((((---------(((-..(.(((....((.((((......)))).))........(((((.....)))))))))))))))))).......... ( -30.60) >consensus GGUAAGUGCCAUAACAUG_UUUUCCUGCUUGGGCGCCUACCAUUGUGGCCAUUCGGGCGGCAGGAUAAUAGCCUGGUACUUUUCCGAGAGCCAGGA ((((.((((.......................)))).)))).((((.(((.....))).))))........((((((.(((....))).)))))). (-21.79 = -22.27 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:40 2006