| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,854,806 – 16,854,925 |
| Length | 119 |
| Max. P | 0.549127 |
| Location | 16,854,806 – 16,854,925 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.22 |
| Mean single sequence MFE | -35.72 |
| Consensus MFE | -22.46 |
| Energy contribution | -23.35 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16854806 119 - 20766785 GGAGCAGUCGAUGGGCUUGUGGUUUGGAGAGCACAAACUCAUCGACAGCAGUUACAUUACCGAUUUUAAGCUGACCAAAGACCUGUAAGUCAUCGG-AGCUUACAAUCAUCCACUGACCU (((((.(((((((((.(((((.((....)).))))).))))))))).))............((((.((((((..((...(((......)))...))-)))))).)))).)))........ ( -40.00) >DroPse_CAF1 5235 117 - 1 GGAGCAGUCGCUGGGUUUGUGGUUCGGCGAGCACCAUGUCAUCGACAGUAGCUUCAUCACCGACUUCCGGGUGACCAGCAAACUGUAAG--AUCAGUUGCCCCCACAUUUCCGUUUUCC- (((((....)).(((..(((((...(((((((....((((...))))...))))..(((((........)))))......(((((....--..)))))))).)))))..)))....)))- ( -34.20) >DroSec_CAF1 5228 119 - 1 GGAGCAGUCGAUGGGCCUGUGGUUUGGAGAGCACAAACUCAUCGACAGCAGUUACAUUACCGAUUUCAAGCUGACCAAAGAUCUGUAAGUCAUCGG-AGCUCCCAAUCAUCCACUGACCU (((((.(((((((((..((((.((....)).))))..))))))))).............(((((..(..((.((.......)).))..)..)))))-.)))))................. ( -35.80) >DroSim_CAF1 5234 119 - 1 GGAGCAGUCGAUGGGCCUGUGGUUUGGAGAGCAUAAACUCAUCGACAGCAGUUACAUUACCGAUUUCAAGCUGACCAAAGAUCUGUAAGUCAUCGG-AGCUCCCAAUCAUCCACUGACCU (((((.(((((((((..((((.((....)).))))..))))))))).............(((((..(..((.((.......)).))..)..)))))-.)))))................. ( -33.90) >DroYak_CAF1 5267 119 - 1 GGAGCAGUCGAUGGGCUUGUGGUUUGGAGAGCACAAACUCAUCGACAGCAGUUACAUUACCGAUUUUAAACUCACCAAAAACCUGUAAGUCAUCAG-UGCUCCCACUCUUCCACUGACCU (((((((((((((((.(((((.((....)).))))).)))))))))....................................(((........)))-))))))................. ( -32.60) >DroAna_CAF1 8694 116 - 1 GGAGCAGUCGAUGGGAUUGUGGUUCGGAGAGCAUAGCGUGAUUGACAGCAGUUAUAUCACCGACUUUCGGGUCACCAGGAAUCUGUAAGUU-CCAG-ACAUCUUAAUC--CCAUCUACUU .....(((.(((((((((((((..((.((((....(.(((((((((....)))).))))))..))))))..))))..(((((......)))-))..-.......))))--))))).))). ( -37.80) >consensus GGAGCAGUCGAUGGGCUUGUGGUUUGGAGAGCACAAACUCAUCGACAGCAGUUACAUUACCGAUUUCAAGCUGACCAAAAAUCUGUAAGUCAUCAG_AGCUCCCAAUCAUCCACUGACCU (((((.(((((((((.(((((.((....)).))))).)))))))))....................................(((........)))..)))))................. (-22.46 = -23.35 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:39 2006