| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,853,860 – 16,853,962 |
| Length | 102 |
| Max. P | 0.954981 |
| Location | 16,853,860 – 16,853,962 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 75.21 |
| Mean single sequence MFE | -14.26 |
| Consensus MFE | -10.44 |
| Energy contribution | -11.47 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16853860 102 - 20766785 AUUAAAAAGCAGUUAAUUCAUCAAUGAGCCAGCUGCACCACCU-CUACCCCCCCCCCCACCCCUUGAAAAAUCAAUGAAACGCACAAACAAUGUGCUCAAUGC ........((((((..((((....))))..)))))).......-.................(.((((....)))).)....(((((.....)))))....... ( -16.30) >DroSec_CAF1 4295 92 - 1 AUUAAAAAGCAGUUAAUUCAUCAAUGAGCCAGCUGCAGCCCCU-CAGCCCC-CC---------CAGAUAAAUCAAUGAAACGCACAAACAAUGUGCUCAAUGC ........((((((..((((....))))..)))))).......-.......-..---------.........((.(((...(((((.....)))))))).)). ( -16.10) >DroSim_CAF1 4299 93 - 1 AUUAAAAAGCAGUUAAUUCAUCAAUGAGCCAGCUGCAUCCCCU-CAGCCCCCCC---------CUGAAAAAUCAAUGAAACGCACAAACAAUGUGCUCAAUGC ........((((((..((((....))))..))))))......(-(((.......---------)))).....((.(((...(((((.....)))))))).)). ( -17.90) >DroEre_CAF1 4484 90 - 1 AUUAAAAAUCAGUUAAUUCAUCAAUGAGCCAGCUGCAUCCCCCUCUUC----CC---------CCAAAAAACGAACGAAUCGCACAAACAAUGUGCUCAAUGC .........(((((..((((....))))..))))).............----..---------..................(((((.....)))))....... ( -11.10) >DroYak_CAF1 4320 85 - 1 AUUAAAAAGCAGUUAAUUCAUCAAUGAGCCAGCUGCAUUUCCC---------CC---------CUGAAAAGCGACCGAAUCGCACAAACAAUGUGCUCAAUGC ........((((((..((((....))))..))))))..(((..---------.(---------((....)).)...)))..(((((.....)))))....... ( -16.40) >DroAna_CAF1 4285 90 - 1 AUUAAAAAGCUGUUAAUUGAUCAAUAAGCCAGCUGCGCCUACCUCAAAACC-------------UCGACAACGAAAACAUAAUCCCAGCCACAUGAACAAUGC ........((((....((((.......((.....)).......))))....-------------(((....)))...........)))).............. ( -7.74) >consensus AUUAAAAAGCAGUUAAUUCAUCAAUGAGCCAGCUGCAUCCCCC_CAACCCC_CC_________CUGAAAAACCAAUGAAACGCACAAACAAUGUGCUCAAUGC ........((((((..((((....))))..)))))).............................................(((((.....)))))....... (-10.44 = -11.47 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:38 2006