Locus 5182

Sequence ID 2R_DroMel_CAF1
Location 16,851,017 – 16,851,137
Length 120
Max. P 0.555665
window8286

overview

Window 6

Location 16,851,017 – 16,851,137
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.94
Mean single sequence MFE -40.18
Consensus MFE -22.93
Energy contribution -21.47
Covariance contribution -1.47
Combinations/Pair 1.59
Mean z-score -1.45
Structure conservation index 0.57
SVM decision value 0.04
SVM RNA-class probability 0.555665
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16851017 120 - 20766785
CGGACUCCAUUUGGCGUCUGAAACACCAGCUGCAACUCGGCCAGCUCGGCCUUGAUUUUGCAGCGCAGUAAGCCCUUGGCCGAAGGCAAUUCCUUAACAGCCACAUCCGCUGGCACGUCC
.((((........(((.(((......))).)))......((((((((((((..(..(((((......)))))..)..)))))).(((............)))......))))))..)))) ( -42.30)
>DroVir_CAF1 1450 120 - 1
CGCACGCCGUUGGGCGUUUGUAUGAUCAGCUGCAGCUCUGCCAGCUCUGUCUUGACUUUCAGCCUGAGCAAUCCCUUGGCCGAGGGCAGCUCCUUGACGGCCACAUCCGCCGGCACGUCC
((.(((((....))))).)).......((((((..(((.((((((((....(((.....)))...)))).......)))).))).))))))....(((((((.........))).)))). ( -41.11)
>DroGri_CAF1 1477 120 - 1
CGUACACCAUUUGGCGUUUGUAUAACCAACUGCAGUUCCGCCAGCUCCGCUUUGACUUUGAUCUUUAACUGGCCUUUGGCCGAAGGCAGCUCCUUGACCGCCACAUCGGCGGGUACAUCG
.((((......(((((.(((((........)))))...)))))(((..(((((((......))......(((((...))))))))))))).......(((((.....))))))))).... ( -35.40)
>DroWil_CAF1 1470 120 - 1
CGUACUCCAUCCGGUGUAUGUAUCACCAAUUGCAACUCGGUCAAUUCGGCUUUAAUUUUAAAUCUUAGCAGACCCUUGGCUGAGGGCAAUUCCUUUACAGCCACAUCGGCUGGCACAUCC
.((...(((.(((((((.((((.....((((((..(((((((((.((.(((...............))).))...))))))))).))))))....))))...))))))).))).)).... ( -35.96)
>DroMoj_CAF1 1541 120 - 1
CGAACGCCGUUGGGCGUCUUGAUAACGAGCUGCAGUUCCGCCAGUUCGGCCUUGAUUUUCAGCUUAAGCAAACCCUUGGCCGAGGGCAGCUCCUUGACGGCCACAUCGGCCGGCACAUCG
.((.((((....))))))..(((..((((((((......).)))))))(((..........((....))........((((((.(((..(.....)...)))...)))))))))..))). ( -43.10)
>DroAna_CAF1 1437 120 - 1
CUUACUCCACUUGGUGUUUGGAACACCAGCUGCAGCUCGGCCAGUUCUGCCUUAAUCCUGCAACGCAGUAGGCCCUUGGCUGACGGCAAUUCCUUCACCGCCACAUCGGCGGGAACAUCG
............(((((((((((.....(((((((((.((((....((((.((........)).))))..))))...))))).))))..))))....(((((.....)))))))))))). ( -43.20)
>consensus
CGUACUCCAUUUGGCGUUUGUAUCACCAGCUGCAGCUCGGCCAGCUCGGCCUUGAUUUUGAACCUCAGCAAGCCCUUGGCCGAGGGCAACUCCUUGACAGCCACAUCGGCCGGCACAUCC
............(((((..........((((((...((.(((((....(.((((...((((...)))))))).).))))).))..))))))......(((((.....)))))..))))). (-22.93 = -21.47 +  -1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:36 2006