Locus 518

Sequence ID 2R_DroMel_CAF1
Location 2,798,097 – 2,798,206
Length 109
Max. P 0.968830
window981

overview

Window 1

Location 2,798,097 – 2,798,206
Length 109
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 84.23
Mean single sequence MFE -22.24
Consensus MFE -16.02
Energy contribution -16.02
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -2.58
Structure conservation index 0.72
SVM decision value 1.63
SVM RNA-class probability 0.968830
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2798097 109 + 20766785
UUGGGAAGGUAUAUGAAAAUCAAAUGCACUCUUGUGCAACAAGAACCCACUCCACCUUGCGGUCAUCUGAAUCGAAUCUUCCUACUUUUCUCGCACCUCUG----CAUCAUCC
.(((((((((..............(((((....)))))...((((((((........)).)))..))).......)))))))))........(((....))----)....... ( -22.60)
>DroSec_CAF1 5037 109 + 1
UUGGGAAGUUAUAUAGAAACCAAAUGCACUCUUGUGCAACAAGAACCCACUCCAUCCUGCGGUCAUCUGAAUCGAAUCUUCCCAGUUUUCUCCCACUUCUG----CAUCAUCC
((((((((.....((((.......(((((....)))))....((.((((........)).)))).))))........))))))))................----........ ( -21.02)
>DroSim_CAF1 5124 109 + 1
UUGGGAAGUUAUUUAGAAACCAAAUGCACUCUUGUGCAACAAGAACCCACUCCAUCCUGCGGUCAUCUGAAUCGAAUCUUCCCACUUUUCUCCCACCUCUG----CAUCAUCC
.(((((((..(((((((.......(((((....)))))....((.((((........)).)))).))))))).....))))))).................----........ ( -24.40)
>DroEre_CAF1 5044 102 + 1
UUAGGAAGUUAUAUCGAAACCAAAUGCACUCUUGUGCAACAAGGACCCACUCCACCUUGAGGUCAUC-----------UUUCCACUUUUCUUCCACAACUAUACGCAUCAUCC
...(((((.......((((((...(((((....))))).(((((..........))))).)))....-----------.))).......)))))................... ( -20.94)
>consensus
UUGGGAAGUUAUAUAGAAACCAAAUGCACUCUUGUGCAACAAGAACCCACUCCACCCUGCGGUCAUCUGAAUCGAAUCUUCCCACUUUUCUCCCACCUCUG____CAUCAUCC
.(((((((................(((((....)))))....((.((((........)).)))).............)))))))............................. (-16.02 = -16.02 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:46 2006