Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,843,915 – 16,844,019 |
Length | 104 |
Max. P | 0.541091 |
Location | 16,843,915 – 16,844,019 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 77.69 |
Mean single sequence MFE | -19.14 |
Consensus MFE | -12.75 |
Energy contribution | -13.15 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.67 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.541091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16843915 104 - 20766785 UAAUUCUAUGAAAAAUUAGGACAUCUGAUCCCUUUGUUUUUCAAAACAUAAGAGGCU-ACAAAGGAAGCCAUUGGUUGCACAGACGAAUGGCAAAUAACGCAUUU ...(((((........))))).........(((((((.((((.........))))..-)))))))..((((((.(((.....))).))))))............. ( -23.10) >DroSec_CAF1 12801 84 - 1 AAAUUCUAUGAAUAAUUAAGACAUCUGAUCCCUUU--------------------CU-CCAAAGGAAGCCAUUGGUUGCACAGACGAAUGGCAAAUAACACAUUU ..............................(((((--------------------..-..)))))..((((((.(((.....))).))))))............. ( -15.50) >DroSim_CAF1 12008 84 - 1 UAAUUCUAUGAAUAAUUAAGACAUCUGAUCCCUUU--------------------CU-CCAAAGGAAGCCAUUGGUUGCACAGACGAAUGGCAAAUAACACAUUU ..............................(((((--------------------..-..)))))..((((((.(((.....))).))))))............. ( -15.50) >DroEre_CAF1 13496 104 - 1 UACCUCUAUAGAUAAUAAAGACGUCAGAUUCCUUCCGU-UUCAAAAUAUAAGAGGGUACAAAAGGAAGCCAUUGGUUGCACGGACGAAUGGCAAAUAACACAUUU ..((((((((........(((((..((....))..)))-)).....))).)))))............((((((.(((.....))).))))))............. ( -22.52) >DroYak_CAF1 11999 104 - 1 UAACUCUAUGGAUAAUUUAAACAUCUGAUCCCUUCAAU-UUUAAAAUAUAAGUGGGUACAAAAGGAAGCCAUUGGUUGCACGGACGAAUGGCAAAUAACACACUU ..((.((((..(((.((((((....(((.....)))..-)))))).)))..))))))..........((((((.(((.....))).))))))............. ( -19.10) >consensus UAAUUCUAUGAAUAAUUAAGACAUCUGAUCCCUUU__U_UU_AAAA_AUAAG_GGCU_CCAAAGGAAGCCAUUGGUUGCACAGACGAAUGGCAAAUAACACAUUU ..............................(((((.........................)))))..((((((.(((.....))).))))))............. (-12.75 = -13.15 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:30 2006